Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_M02
(531 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32) 192 1e-49
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_19021| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37) 28 5.4
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_58727| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_41944| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 27 9.5
SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_24942| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
Length = 245
Score = 192 bits (469), Expect = 1e-49
Identities = 93/160 (58%), Positives = 117/160 (73%)
Frame = +1
Query: 16 EDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKE 195
+D K+P VPE++ + L ++ KRKEIFKRAE+YVKEYR KE
Sbjct: 3 QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62
Query: 196 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRL 375
DE+R+ + A+ GN+YVP EA+LAFVIRIRG+N VSPKVRK+LQL RLRQINNGVFVRL
Sbjct: 63 VDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLLRLRQINNGVFVRL 122
Query: 376 NKATVNMLRIAEPYIAWGYPNLKSVRELGVQTRFRQTERE 495
NKAT NMLRI +PYIA+GYPNLKSVREL + + + +++
Sbjct: 123 NKATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVDKQ 162
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 407 LSPILHGATPT*RVSESWVYKRGFAKLNGKRVPITSNSLIE 529
+ P + P + +YKRG+ K++ +RV +T NS++E
Sbjct: 133 VQPYIAFGYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVE 173
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 517 VGGDRDTLPVQFGETAFVHPTLGHSSSWGSPMQYRAQRYEACSLWPC*DERTRRC 353
V +R P Q + P +S + +P Q ++RY A S PC ER C
Sbjct: 580 VNSERYHAPSQVNSERYNAPNQVNSERYNAPSQVNSERYNAPSQSPC-TERYTPC 633
>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 118 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 243
R + +R+EI++R E Y + + R+ RL R R Y
Sbjct: 27 RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68
>SB_19021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 590
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 272 LSSVFVVSTKYHPRYARYCSCSGCVRS 352
L S+FV +T RY YC+C G + S
Sbjct: 286 LGSIFVWATGNGGRYNDYCNCDGYITS 312
>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1981
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 208 RLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRK 321
RL R + R NYY+ + +AF + I V + P R+
Sbjct: 1886 RLRRTEKRRQNYYIATQKLMAFALNIYEVLKDDPLTRR 1923
>SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/36 (25%), Positives = 22/36 (61%)
Frame = +1
Query: 121 SASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQAR 228
S +KRK +FK ++ K+ ++++ D +++ Q +
Sbjct: 802 STETRKRKHVFKSGDRTAKKRKLEDNDHEKISTQVK 837
>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
Length = 712
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 190 KERDEIRLARQARNRGNYYVP 252
K RD +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503
>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 118 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 243
R +I +R+E+++R E Y + + R+ R R R Y
Sbjct: 16 RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57
>SB_58727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 237 ATVTSLSCQSDF-ITLLDAVFFDILFGSLKD 148
ATV+ S + F T L V+FD F SLKD
Sbjct: 6 ATVSGRSMRLSFGATALSGVWFDFYFSSLKD 36
>SB_41944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -2
Query: 323 TLRTLGDTWLTPRIRMTNASLASPGT**LPRLRACLANLISSRSLMRYSLTYCS 162
TL +L D + PR+ + SL PG +PRL L +L + R L S
Sbjct: 467 TLLSLTDPGVIPRLLLALLSLTDPGV--IPRLLLALLSLTHPEVIPRLLLALLS 518
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 133 KKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 267
KK KE+ + Q ++ + + D RLA + R R +P + ++
Sbjct: 967 KKAKELVSKQRQISTKFELMDNDLYRLAEKLRERKRLGLPEQEEV 1011
>SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1501
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +1
Query: 109 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 267
++R ++R+E +R + +E R++ DE+R R+ +RG + E +L
Sbjct: 1148 MRREEKDARRREEEERRLRE--EEDRLRREDELRRKREDDDRGRRKLAEERRL 1198
>SB_24942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 27.1 bits (57), Expect = 9.5
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +2
Query: 215 QDRLVTVAIIMCPVKLN*HLSSVFVVSTKYHPRYARYCSCSGCVRSTTACSFVSTRPQ*T 394
QDRL I+ P + + +F S K PR A CS + + S T + +T +
Sbjct: 8 QDRLAGRRIVAQPSAI---AAFLFATSFKGEPRAAAKCSLNRLLTSWTEGTRHTTLSETF 64
Query: 395 CFVSLSPI-LHGATPT 439
F LS HGA P+
Sbjct: 65 AFARLSRFHQHGAYPS 80
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,086,645
Number of Sequences: 59808
Number of extensions: 335882
Number of successful extensions: 1060
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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