Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_M02
(531 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal pro... 163 5e-41
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 33 0.13
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 33 0.13
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 33 0.13
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 33 0.13
U41272-6|AAA82450.2| 331|Caenorhabditis elegans Serpentine rece... 29 1.6
AF016672-5|AAB66120.1| 951|Caenorhabditis elegans Hypothetical ... 28 3.6
AF047658-4|AAC04417.1| 392|Caenorhabditis elegans Hypothetical ... 28 4.8
AC006631-2|AAL02500.1| 142|Caenorhabditis elegans Hypothetical ... 28 4.8
Z82095-7|CAN86628.1| 390|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z82095-6|CAI79281.2| 412|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z82095-5|CAB05026.2| 414|Caenorhabditis elegans Hypothetical pr... 27 8.4
>AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7 protein.
Length = 244
Score = 163 bits (397), Expect = 5e-41
Identities = 75/161 (46%), Positives = 110/161 (68%)
Frame = +1
Query: 22 SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERD 201
+KK+P VPE+V Q + + + +K+ + FKRAE+YV+EYR +++
Sbjct: 4 TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63
Query: 202 EIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNK 381
+RL R+A +G++YVP E K+AFV+RIRG+NQ+ PK RK LQ+ RLRQINNGVFV+LNK
Sbjct: 64 GLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNK 123
Query: 382 ATVNMLRIAEPYIAWGYPNLKSVRELGVQTRFRQTEREACP 504
AT+ +LRI EPY+AWGYPN K++ +L + + + + P
Sbjct: 124 ATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVP 164
Score = 40.3 bits (90), Expect = 8e-04
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +2
Query: 407 LSPILHGATPT*RVSESWVYKRGFAKLNGKRVPITSNSLIE 529
+ P + P + +YKRG+AK++G RVPIT N+++E
Sbjct: 132 IEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVE 172
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 33.1 bits (72), Expect = 0.13
Identities = 26/109 (23%), Positives = 44/109 (40%)
Frame = +1
Query: 181 YRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNG 360
YR+ + E ++ ++ Y P E +V+++R NQV Q RQ G
Sbjct: 1853 YRVGNQPE-KVLTVPGDQTEYTFPAEPNQRWVVKLRATNQVGSSQWSPEQSITTRQ---G 1908
Query: 361 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELGVQTRFRQTEREACPD 507
+ V L E ++ W P ++ +G +R R ACP+
Sbjct: 1909 APGSVRDLRVKALSPNEVHVQWLAPLVQRGTIVGYDISYRLKHRLACPE 1957
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 33.1 bits (72), Expect = 0.13
Identities = 26/109 (23%), Positives = 44/109 (40%)
Frame = +1
Query: 181 YRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNG 360
YR+ + E ++ ++ Y P E +V+++R NQV Q RQ G
Sbjct: 1853 YRVGNQPE-KVLTVPGDQTEYTFPAEPNQRWVVKLRATNQVGSSQWSPEQSITTRQ---G 1908
Query: 361 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELGVQTRFRQTEREACPD 507
+ V L E ++ W P ++ +G +R R ACP+
Sbjct: 1909 APGSVRDLRVKALSPNEVHVQWLAPLVQRGTIVGYDISYRLKHRLACPE 1957
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 33.1 bits (72), Expect = 0.13
Identities = 26/109 (23%), Positives = 44/109 (40%)
Frame = +1
Query: 181 YRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNG 360
YR+ + E ++ ++ Y P E +V+++R NQV Q RQ G
Sbjct: 1853 YRVGNQPE-KVLTVPGDQTEYTFPAEPNQRWVVKLRATNQVGSSQWSPEQSITTRQ---G 1908
Query: 361 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELGVQTRFRQTEREACPD 507
+ V L E ++ W P ++ +G +R R ACP+
Sbjct: 1909 APGSVRDLRVKALSPNEVHVQWLAPLVQRGTIVGYDISYRLKHRLACPE 1957
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 33.1 bits (72), Expect = 0.13
Identities = 26/109 (23%), Positives = 44/109 (40%)
Frame = +1
Query: 181 YRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNG 360
YR+ + E ++ ++ Y P E +V+++R NQV Q RQ G
Sbjct: 1853 YRVGNQPE-KVLTVPGDQTEYTFPAEPNQRWVVKLRATNQVGSSQWSPEQSITTRQ---G 1908
Query: 361 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELGVQTRFRQTEREACPD 507
+ V L E ++ W P ++ +G +R R ACP+
Sbjct: 1909 APGSVRDLRVKALSPNEVHVQWLAPLVQRGTIVGYDISYRLKHRLACPE 1957
>U41272-6|AAA82450.2| 331|Caenorhabditis elegans Serpentine
receptor, class u protein48 protein.
Length = 331
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 484 FGETAFVHPTLGHSSSWGSPMQY 416
FG T F++P G+ WGSP+ +
Sbjct: 165 FGITYFMYPAKGYCRQWGSPLGF 187
>AF016672-5|AAB66120.1| 951|Caenorhabditis elegans Hypothetical
protein F56D12.6b protein.
Length = 951
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/108 (17%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Frame = +1
Query: 103 ITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL-AFVI 279
++LK ++KK +E Q+VKE E + ++ ++ N+ ++Y+ + + A +
Sbjct: 1 MSLKVLQENLKKSEETVAEVAQFVKERLSVEDEYVKAINRSVNKVSHYIQNGSSIDAMWL 60
Query: 280 RIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIA 423
+G ++ ++ V+ + L+ ++ V + +P +A
Sbjct: 61 LTKGTMELMAEIH-VMLVKNLQDLSREVLKYKEDVNRTRKELKQPQVA 107
>AF047658-4|AAC04417.1| 392|Caenorhabditis elegans Hypothetical
protein K03H6.1 protein.
Length = 392
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 388 VNMLRIAEPYIAWGYPNLKSVRELGVQTRFRQTEREA 498
+NML I + I W P L+S+R ++ RQ +R A
Sbjct: 244 LNMLMIRQLKINWTSPRLESMRGAMTRSHVRQRQRVA 280
>AC006631-2|AAL02500.1| 142|Caenorhabditis elegans Hypothetical
protein F27B3.7 protein.
Length = 142
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = +2
Query: 119 VPLPLRRGK-----KSLREPNNMSKNTASRSVMKSD 211
+PL +RR KS+ +P N+ NTA ++M SD
Sbjct: 25 IPLEIRRKHNLTQLKSMIDPQNLDDNTALEAIMNSD 60
>Z82095-7|CAN86628.1| 390|Caenorhabditis elegans Hypothetical
protein ZK849.2c protein.
Length = 390
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 101 RSHSRGVPLPLRRGKKSLREPNNMSKN 181
R +++G+ PLR KSLR+ N + K+
Sbjct: 233 RGNTKGLTAPLRHNFKSLRKRNGVGKS 259
>Z82095-6|CAI79281.2| 412|Caenorhabditis elegans Hypothetical
protein ZK849.2b protein.
Length = 412
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 101 RSHSRGVPLPLRRGKKSLREPNNMSKN 181
R +++G+ PLR KSLR+ N + K+
Sbjct: 255 RGNTKGLTAPLRHNFKSLRKRNGVGKS 281
>Z82095-5|CAB05026.2| 414|Caenorhabditis elegans Hypothetical
protein ZK849.2a protein.
Length = 414
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 101 RSHSRGVPLPLRRGKKSLREPNNMSKN 181
R +++G+ PLR KSLR+ N + K+
Sbjct: 257 RGNTKGLTAPLRHNFKSLRKRNGVGKS 283
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,334,206
Number of Sequences: 27780
Number of extensions: 242282
Number of successful extensions: 848
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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