Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_M01
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    39   4e-04
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    29   0.36 
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    26   3.4  
SPCC4F11.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        26   4.5  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 19/46 (41%), Positives = 31/46 (67%)
 Frame = +1

Query: 25  LIYASLGALIFSIYLVYDTQLMMGGKHKYSISPEEYIFAALNLYLD 162
           + +A  G L+F  Y+++DT  ++   H+YS  PEE+I ++L LYLD
Sbjct: 205 MAFAGFGTLVFCGYILFDTYNIL---HRYS--PEEFIMSSLMLYLD 245


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = -1

Query: 460  GCSSHKYQLYQRQLDTLKVFVNCKSFYINRIAIITKVELKKKNRL-NHKYYTGNTC*NDS 284
            G   ++  L  +Q+ + KVF+NC SF+I        +++    R+ N  Y       +D+
Sbjct: 896  GRIDNRSDLISKQIMSRKVFINCSSFFIIPNDEYPNMDILDSTRIHNEDYELARKMASDA 955

Query: 283  LILYNGNVFRL-THRSTV 233
            L L   ++  L T+R  V
Sbjct: 956  LELDEEDIEELETNRGVV 973


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 286 SLILYNGNVFRLTHRSTVDPDPGPS 212
           +++LY  NV+R  H     P P PS
Sbjct: 66  AVVLYGANVYRFRHPDPHQPLPDPS 90


>SPCC4F11.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 80

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 397 NCKS-FYINRIAIITKVELKKKNRLN 323
           NC S  +INR+AI+ + E  KK++ N
Sbjct: 51  NCTSVIHINRVAIVIEQEKGKKSKQN 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,851,038
Number of Sequences: 5004
Number of extensions: 31316
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)