Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L24
         (383 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    31   0.005
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    23   1.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   3.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   4.2  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 30.7 bits (66), Expect = 0.005
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = +3

Query: 39  EKTPIEGRPFQLDCVQPNAYPKPLITWKKRLSGADPNADVTDF--DRRITAGPDGNLYFT 212
           +K   +G    ++C + + +P+P++TW KR +G  P  D  DF  +       DG L  T
Sbjct: 707 DKAFAQGSDAAVEC-KADGFPRPVVTW-KRATGVSP-GDYKDFKPNNPDIKVEDGTL--T 761

Query: 213 IVTKEDVSDIYKYVCTAKN 269
           I   +  ++ Y Y+C A N
Sbjct: 762 INNIQKTNEGY-YLCEAVN 779



 Score = 27.9 bits (59), Expect = 0.037
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = +3

Query: 96  YPKPLITWKKRLSGADPNADVTDFDR-RITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNA 272
           +P P   W K + G      VT  DR +  AG        I+ +  V D  KY+C   N+
Sbjct: 259 FPSPSFRWYKFVEGTTRKQAVTLNDRVKQVAGT------LIIREAKVEDSGKYLCVVNNS 312

Query: 273 AVDEEVVLV 299
              E V  V
Sbjct: 313 VGGESVETV 321



 Score = 25.0 bits (52), Expect = 0.26
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 99   PKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKN 269
            P P+ITWK +          T  D +I   PDG+L+   V++ +  +   Y C  +N
Sbjct: 1334 PPPVITWKIK------GVQFTTSD-KIRQQPDGSLFIRDVSRNNAGE---YSCHVEN 1380


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 351 AHLCTQSCLLS 319
           AHLC Q CLL+
Sbjct: 7   AHLCAQFCLLA 17


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 202 RFPSGPAVMRRSKSVTS 152
           R+PSGP +  RS + T+
Sbjct: 36  RYPSGPELSDRSAAYTN 52


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 6   TYLIASPAKTHEKTPIEGRPF 68
           T+      K H+KTP   RP+
Sbjct: 291 THKYTHEIKLHDKTPFLKRPY 311


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,790
Number of Sequences: 336
Number of extensions: 1697
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8014124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)