Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L24
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    30   0.14 
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    26   1.8  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   3.1  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   4.1  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    24   7.1  
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc...    24   9.4  

>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 29.9 bits (64), Expect = 0.14
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
 Frame = +3

Query: 108 LITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYV---------CT 260
           L++  KRLSG + +A +   D         N+Y T+   E +  I+ ++         C 
Sbjct: 34  LLSMDKRLSGLEASAGILRDDVTNYNRVSSNIYDTLKEMESLQVIHSHLPVLQKGLQECQ 93

Query: 261 AKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSK 374
             N +V + +  V   +K + +D +  +G P+ Q+ SK
Sbjct: 94  NLNKSVSQNLKSVMDILKSLAEDYTSLEGSPL-QFASK 130


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 117 WKKR--LSGADPNADVTDFDRRITAGPDGN 200
           WK+   ++  +PNA +T F+R   +  DGN
Sbjct: 458 WKRTDDIASGEPNAILTSFNRNFRSRNDGN 487


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 114  TWKKRLSGADPNADV 158
            TW+KRL G   N DV
Sbjct: 1468 TWRKRLEGCQKNVDV 1482


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 20  IASEDTRENANRRQAFPIGLCAAERL 97
           I + DT   A RRQ F   L AAER+
Sbjct: 474 IFNNDTLSRAERRQRFRQSLRAAERI 499


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 163 SVTSALGSAPDKRFFQVIKGLG*AFGCTQSNWKGL 59
           S  S++GS   K+  + I  L   FGC + NWK L
Sbjct: 311 SQCSSMGSFGPKQ--EYIAELTDGFGCQRGNWKFL 343


>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 278 DRCVLGGAYVFINVTDVFFSDDCEVEV 198
           D  +L   + F+ + D FF + CE+++
Sbjct: 78  DLAILEMIHFFVEILDSFFGNVCELDL 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,471,094
Number of Sequences: 5004
Number of extensions: 26651
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)