Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L24
         (383 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              31   0.005
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   8.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 31.1 bits (67), Expect = 0.005
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +3

Query: 39  EKTPIEGRPFQLDCVQPNAYPKPLITWKKRLSGADPNADVTD--FDRRITAGPDGNLYFT 212
           +K   +G   +++C + + +PKP +TWKK  +  D   D TD        +  DG L   
Sbjct: 687 DKAFAQGSDARVEC-KADGFPKPQVTWKK--AAGDTPGDYTDLKLSNPDISVEDGTLSIN 743

Query: 213 IVTKEDVSDIYKYVCTAKN 269
            + K   ++ Y Y+C A N
Sbjct: 744 NIQK--TNEGY-YLCEAVN 759



 Score = 25.4 bits (53), Expect = 0.23
 Identities = 21/78 (26%), Positives = 33/78 (42%)
 Frame = +3

Query: 39  EKTPIEGRPFQLDCVQPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIV 218
           +K  + G   ++ C     YP   I W++       +  V   +R+    P+G L    V
Sbjct: 499 KKAIVAGETLRVTCPVAG-YPIESIVWER-------DTRVLPINRKQKVFPNGTLIIENV 550

Query: 219 TKEDVSDIYKYVCTAKNA 272
             E +SD   Y C A+NA
Sbjct: 551 --ERMSDQATYTCVARNA 566



 Score = 22.2 bits (45), Expect = 2.1
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +3

Query: 246 KYVCTAKNAA 275
           +YVCTA+NAA
Sbjct: 655 EYVCTAENAA 664


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 189 PDGNLYFTIVTKEDVSDIYKYVCTAKN 269
           PDG +    ++  + SD   Y C A N
Sbjct: 865 PDGVIAQLQISSAEASDSGAYFCQASN 891



 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 72  LDCVQPNAYPKPLITWKK 125
           L C Q    P P I WKK
Sbjct: 729 LHC-QAQGVPTPTIVWKK 745


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 189 PDGNLYFTIVTKEDVSDIYKYVCTAKN 269
           PDG +    ++  + SD   Y C A N
Sbjct: 861 PDGVIAQLQISSAEASDSGAYFCQASN 887



 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 72  LDCVQPNAYPKPLITWKK 125
           L C Q    P P I WKK
Sbjct: 725 LHC-QAQGVPTPTIVWKK 741


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 77  VQLERPAFDWRFLVCLRW 24
           V L  P +DW   + L+W
Sbjct: 255 VPLSHPTYDWFEKLELKW 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,674
Number of Sequences: 438
Number of extensions: 1898
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)