Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L23
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce...   182   2e-47
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    99   1e-22
SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ...    64   7e-12
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    29   0.23 
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    27   0.92 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   1.2  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   2.1  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          26   2.8  
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa...    25   3.7  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    25   4.9  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    25   6.5  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    25   6.5  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    24   8.6  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    24   8.6  

>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score =  182 bits (443), Expect = 2e-47
 Identities = 89/144 (61%), Positives = 109/144 (75%), Gaps = 4/144 (2%)
 Frame = +3

Query: 6   MGKTSKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFDNVLRAVDLCAAPGSWSQVLT 185
           MG++SKDKRD YYRLAKE+GWRARSAFKLLQ+NE++N+F+   R VDLCAAPGSWSQVL+
Sbjct: 1   MGRSSKDKRDAYYRLAKEQGWRARSAFKLLQLNEQFNLFEGAKRVVDLCAAPGSWSQVLS 60

Query: 186 KTLRQNAENV----EDVKIVAVDLQAMAALPGVKQIQGDITKLSTACSIIKEFEGLKADL 353
           + L +N +      E   IVAVDLQ MA + GV  +Q DIT  +T   I+  F    ADL
Sbjct: 61  RELLKNIDTSIAADEKPMIVAVDLQPMAPIDGVCTLQLDITHPNTLSIILSHFGNEPADL 120

Query: 354 VVCDGAPDVTGLHDIDEYVQSQLL 425
           VV DGAPDVTGLHD+DEY+Q+Q+L
Sbjct: 121 VVSDGAPDVTGLHDLDEYIQAQIL 144


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score =   99 bits (238), Expect = 1e-22
 Identities = 54/138 (39%), Positives = 81/138 (58%)
 Frame = +3

Query: 12  KTSKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFDNVLRAVDLCAAPGSWSQVLTKT 191
           KT+K + D +Y+LAKE+G+R+R+AFKL+Q+N++Y+  +     +DLCAAPG W QV +KT
Sbjct: 7   KTAKGRLDKWYKLAKEQGYRSRAAFKLVQLNQKYSFLEKAKVIIDLCAAPGGWLQVASKT 66

Query: 192 LRQNAENVEDVKIVAVDLQAMAALPGVKQIQGDITKLSTACSIIKEFEGLKADLVVCDGA 371
            +  +       IV VDL  +  +P       DIT       +    +  KAD+V+ DGA
Sbjct: 67  CKPGS------LIVGVDLAPIKPIPNCHTFVEDITSDKCRSQLRGYLKTWKADVVLHDGA 120

Query: 372 PDVTGLHDIDEYVQSQLL 425
           P+V      D Y Q+QL+
Sbjct: 121 PNVGSAWLQDAYGQAQLV 138


>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 64.5 bits (150), Expect = 7e-12
 Identities = 36/109 (33%), Positives = 61/109 (55%)
 Frame = +3

Query: 18  SKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFDNVLRAVDLCAAPGSWSQVLTKTLR 197
           +K  +D Y + +K + +R+R+A+KL+++N +Y   +     +D+  APGSWSQV  K + 
Sbjct: 12  AKRSKDFYRKKSKIDNFRSRAAYKLIELNSKYRFINKEDVVIDVGFAPGSWSQVAKKLVG 71

Query: 198 QNAENVEDVKIVAVDLQAMAALPGVKQIQGDITKLSTACSIIKEFEGLK 344
                    K++ +D+Q +A   GV  I GDI   +T   + K FE L+
Sbjct: 72  NKG------KVIGIDIQHIAPPEGVLPIYGDIRDPNT---LTKLFEALR 111


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 20/77 (25%), Positives = 33/77 (42%)
 Frame = +3

Query: 96  QINEEYNIFDNVLRAVDLCAAPGSWSQVLTKTLRQNAENVEDVKIVAVDLQAMAALPGVK 275
           +IN+E+ +F      VDL  APG WS +  + +          +++A D+          
Sbjct: 65  KINKEHQLFKPGQIVVDLGCAPGIWSTIAARHVGLFG------RVIACDIIPCRLPENSS 118

Query: 276 QIQGDITKLSTACSIIK 326
            IQG+I  +     I K
Sbjct: 119 MIQGNILSMEIQLEIAK 135


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 27.5 bits (58), Expect = 0.92
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 361 HTTRSAFRPSNSFIIEHAVDSFVISPCICLTPG 263
           H     FRP + F +    D+ ++   +CL+PG
Sbjct: 399 HQVGRRFRPGSDFTLATTNDTALLEATLCLSPG 431


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 19/64 (29%), Positives = 34/64 (53%)
 Frame = -2

Query: 403 SSMSCSPVTSGAPSHTTRSAFRPSNSFIIEHAVDSFVISPCICLTPGNAAIACKSTATIL 224
           SS S S  +S + S ++ S+ RPS+S      + S      + +TP +++    ST++ +
Sbjct: 212 SSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSS---SSTSSEV 268

Query: 223 TSST 212
            SST
Sbjct: 269 PSST 272


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 22/66 (33%), Positives = 30/66 (45%)
 Frame = -2

Query: 403 SSMSCSPVTSGAPSHTTRSAFRPSNSFIIEHAVDSFVISPCICLTPGNAAIACKSTATIL 224
           SS S S  +S +PS +  S+   S+SFI      S   S  I      A+    S+A+  
Sbjct: 200 SSSSSSSKSSASPSSSKSSSKFSSSSFITSTTPASSSSSGAIVSNAKTASTDDSSSASSA 259

Query: 223 TSSTFS 206
           TSS  S
Sbjct: 260 TSSVSS 265


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +3

Query: 141 VDLCAAPGSWSQVLTKTLRQNAENVEDVKIVAVDLQAMAAL 263
           +D+CAAPGS +  L + + + A N++D    + +L+++  L
Sbjct: 164 LDMCAAPGSKTAQLIEAVYKKA-NIKDAAHDSKNLKSVEGL 203


>SPAC31G5.18c |||ubiquitin family, human C1ORF55
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 1   EKWVKLQKINEIFTID*LKKKVGEHEVLSNCYKSMKSI 114
           +K  K QK+N++   D    +  +HE L +  +S+ ++
Sbjct: 143 KKEAKKQKLNKVLAADSSSSRFDDHEYLEDLEQSVSNV 180


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 87  KLLQINEEYNIFDNVLRAVDLCAAPGSWSQVLTKTLRQN 203
           K L++N+ YNI    +  +D    PGS +  + +TL+ N
Sbjct: 255 KRLKLNQPYNIMGITVYVLDANHCPGS-AMFVFETLQSN 292


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 369 APDVTGLHDIDEYVQSQ 419
           A D T +H++DEY++ Q
Sbjct: 466 AADETRVHNVDEYIEQQ 482


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 135 RAVDLCAAPGSWSQVLTKTLRQNAENVEDV 224
           + +D+CAAPGS +  L + L +  +  ED+
Sbjct: 146 KVLDMCAAPGSKTAQLLEALHKPTKK-EDI 174


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 141 QLVAHYQKYYTLH*FVTI 88
           QL AHY  +YT   F TI
Sbjct: 87  QLAAHYSSFYTESDFATI 104


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 242 IHSHDLNIFNIFGILSQSFR*NLTPTTRSSTKVYSS*HIIKNIILFID 99
           I S    + NI  +LSQS   NL+P +  S +       +KN++  ++
Sbjct: 225 IQSSQFTLSNISDLLSQSRPDNLSPFSHLSNESSDFFKNVKNVLTDVE 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,630,758
Number of Sequences: 5004
Number of extensions: 29883
Number of successful extensions: 110
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)