Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L23
         (425 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.27 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    25   0.35 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   3.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   5.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   5.8  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   7.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.6  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.27
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 358 TTRSAFRPSNSFIIEHAVDSFVISPCI 278
           +T+S   PSN F+I  A+ +F++  C+
Sbjct: 79  STKSLRTPSNLFVINLAISNFLMMFCM 105


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 25.0 bits (52), Expect = 0.35
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 358 TTRSAFRPSNSFIIEHAVDSFVISPCI 278
           +T+S   PSN F+I  A+  F++  C+
Sbjct: 45  STKSLRTPSNLFVINLAISDFLMMFCM 71


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +1

Query: 232 WLWICKQWQHCLVLNKYRV 288
           W+W    W    VLNK  V
Sbjct: 176 WIWTPHGWMRRNVLNKQHV 194


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 358 TTRSAFRPSNSFIIEHAVDSFVIS 287
           T++S   PSN FI+  A+   +++
Sbjct: 84  TSKSLRTPSNMFIVSLAIFDIIMA 107


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 358 TTRSAFRPSNSFIIEHAVDSFVIS 287
           T++S   PSN FI+  A+   +++
Sbjct: 84  TSKSLRTPSNMFIVSLAIFDIIMA 107


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 412 CTYSSMSCSPVTSGAPSHTTRSAFRPSN 329
           C+YS ++ S + S   SH+    +R +N
Sbjct: 22  CSYSCVNKSMLNSHLKSHSNVYQYRCAN 49


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -3

Query: 171 SNYQEQHKGLQLVAHYQKYYTLH 103
           S  + QH    +  H Q ++ LH
Sbjct: 792 SQQRHQHAAQMIYGHQQSHHGLH 814


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,987
Number of Sequences: 438
Number of extensions: 2256
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)