Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L21
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr...    27   1.4  
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    27   1.4  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   3.2  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    25   4.3  
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi...    24   7.4  
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    24   9.8  

>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 242 IXENEKLVLGSHEDLMKGVSNFFQPALK 159
           + EN  L + SH DL++ V NF   A K
Sbjct: 70  VTENVLLKIASHVDLVEPVENFISTAKK 97


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 105 LLSGGKTESLQDSDHIAGLQRRLEE 179
           +L GGK+ +  D+D +AG + +LEE
Sbjct: 246 ILRGGKSGTNFDADSVAGAKAKLEE 270


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 22  GAGVDYMFKDKIGASATAAHTDVFNRNDYSLGG 120
           G+G   +F DK G    A     F++ DYS  G
Sbjct: 61  GSGASIIFADKAGLKFEAERYGKFDQIDYSTKG 93


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 173 GRSSIRLSLSPRGNPALVSRFPXYXLN 253
           G   + LS +P+GNP+    +  Y  N
Sbjct: 158 GPGKLELSFTPKGNPSAKETYNVYEFN 184


>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 105 LLSGGKTESLQDSDHIAGLQRRLEE 179
           +L GGK     D++H+A +++ LE+
Sbjct: 244 ILRGGKKGPNYDAEHVAAVRKDLEK 268


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 191 GVSNFFQPALKSSD 150
           G+S  FQP LK+SD
Sbjct: 92  GISKSFQPVLKTSD 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,455,196
Number of Sequences: 5004
Number of extensions: 26324
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)