Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L21
         (395 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0216 - 14954047-14956098                                         30   0.59 
09_03_0172 - 13072575-13073800,13075919-13076054                       27   4.1  
11_04_0041 - 12690287-12690816,12691087-12691378                       27   5.5  
03_02_0423 + 8321076-8322164                                           27   5.5  
05_03_0212 + 10260690-10261272,10261921-10262435,10262446-102625...    26   9.6  
04_04_1293 - 32418156-32418584,32420155-32420270,32421798-32421864     26   9.6  
03_01_0205 + 1621760-1621784,1622079-1622208,1622569-1622635,162...    26   9.6  

>11_04_0216 - 14954047-14956098
          Length = 683

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -3

Query: 237 GKRETSAGFPRGLNERRIELLPTGVEVQRCGRSLEEIQFSPQRVV 103
           G      GF  G+ E+R+E  P  VE+++C    + +    +R++
Sbjct: 250 GSSSDGDGFSDGVEEKRLECDPVSVEIKKCEPPAKSLSSVSRRIL 294


>09_03_0172 - 13072575-13073800,13075919-13076054
          Length = 453

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 114 QRVVITIKDIGVSGGRRCTNLVLEHVV 34
           + V++T+KD+   GGR CT L  E  +
Sbjct: 281 RNVILTMKDLTAVGGRFCTYLSKEKAI 307


>11_04_0041 - 12690287-12690816,12691087-12691378
          Length = 273

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 134 SRLRPHRWTSTPVGRSSIRLSLSPRGNPALVSRFP 238
           SRLRP+R  S P  RS   + +S R  P+     P
Sbjct: 138 SRLRPNRCLSEPFRRSGTLVFMSGREEPSFAEPEP 172


>03_02_0423 + 8321076-8322164
          Length = 362

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 68  RPPLTPMSLIVMTTLWGEN*ISSRLRPHRWTSTPVGRSSIRLSLSP 205
           +PP + ++L    T W  +  +   R H W +   GR + RL   P
Sbjct: 246 QPPGSALTLSTSDTYWRMSLPAGATRDHPWCNPVTGRGAPRLDSLP 291


>05_03_0212 +
           10260690-10261272,10261921-10262435,10262446-10262569,
           10262840-10263042,10263169-10263240,10264905-10265007,
           10265350-10265582
          Length = 610

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 216 GFPRGLNERRIELLPTGVEVQRCGRSLEEI 127
           G PRG   ++++ L   +  + CG SLEE+
Sbjct: 460 GKPRGKAVKKLKQLAEKIGSEMCGTSLEEV 489


>04_04_1293 - 32418156-32418584,32420155-32420270,32421798-32421864
          Length = 203

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 61  ASATAAHTDVFNRNDYSLGGKLNLFKTPTTSLDFNAG 171
           A+A A    VF+  D+ +GGK +    PT + D + G
Sbjct: 55  AAAVATEGPVFDMPDFKMGGKKSDDAAPTDAGDEDGG 91


>03_01_0205 +
           1621760-1621784,1622079-1622208,1622569-1622635,
           1622806-1622909,1623099-1623147,1623190-1623290,
           1623623-1623740,1624342-1624455
          Length = 235

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -3

Query: 141 SLEEIQFSPQRVVITIKDIGVSGGRRCTNLVLEHVVHSGTDSVE 10
           +L+ ++FSP + V  ++ + ++GG +C            TDSV+
Sbjct: 125 TLDSVRFSPLQKVAFLEMLSLAGGTKCECHFWSSNYCGSTDSVD 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,365,116
Number of Sequences: 37544
Number of extensions: 175885
Number of successful extensions: 479
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)