Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L20
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    28   0.90 
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   4.8  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   4.8  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   8.4  

>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 2/114 (1%)
 Frame = +1

Query: 157 YTGKNCEVKQLIEYPAFTGSAYLAIKPPTSTRSLKMSMKIKAASPVSDGIIMYCA--ETP 330
           Y     E  ++I   A+   AY  I+   + RS       K+ S V    I Y    + P
Sbjct: 501 YGSNEFETPEMISM-AYEDGAYSQIEDMRNFRSRLDHSTWKSISLVERARIHYLTAFKPP 559

Query: 331 RGYGGFISLAVRNGKLEFRYDLGGGNKPVVLTSNKTLPANEWTDVHIARFGHSV 492
           + Y    S    N  L+   D G    P V  S +  P  +   +H+   GHS+
Sbjct: 560 KQYLPKCSSPKDNRDLKVFADYGSDKLPTVEESLRNSPKPDTLWIHLTVIGHSL 613


>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +1

Query: 205 FTGSAYLAIKPPTSTRSLKMSMKIKAASPV---SDGIIMYCAETPRGYGGFISLAVRNGK 375
           F   ++  +K   S RSLK    +KA +P+   + GII   A  P  +   + L +    
Sbjct: 153 FDKKSHALVKTSDSVRSLKYGSFVKACAPLFRFASGIIK--AHAPHFHQALLKLELAPSA 210

Query: 376 LEF 384
           L F
Sbjct: 211 LRF 213


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -2

Query: 194 SISCFTSQFLPVYVTGQAHL*LSAVFIHLPGPQRPGRHDSPILSQLLPPKP 42
           S+SC    +LP+  T       S + ++     RP    SP +  L PP P
Sbjct: 203 SLSCSPEPYLPLSPTRSPARTPSPIRLYSSDALRPQSPLSPSVEYLTPPNP 253


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 193 EYPAFTGSAYLAIKPPTSTRSLKMSMKIKAASPVSDGIIMYCAETP 330
           EYP F+G    +I  PT++ S++    I   SP+S     + AE P
Sbjct: 202 EYPGFSGLTPFSIHSPTAS-SVRSCQSI-YGSPLSPPNSAFQAEMP 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,142,500
Number of Sequences: 5004
Number of extensions: 44349
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)