Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L18
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   3.9  
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    26   5.1  
SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma...    26   5.1  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   6.8  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   9.0  

>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 22  KYHGGSHTISKSSQSTGPTHPGYNRRH 102
           K H GS+ + +   S    HPG  R H
Sbjct: 874 KSHEGSNDLERQPSSPDTVHPGIKRSH 900


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 139 HDAYCYANRNYVHDVCCNLDESVLCFDCF*I*YDYLHGICLEYS 8
           HD +C+ + +Y HD+   LD  +L  D   + + Y      E S
Sbjct: 231 HD-HCHVSSDYTHDIAHALDRDILERDEIVLQFPYTEAAAQEKS 273


>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -2

Query: 399 IKIQTVIYENYIIYVIDYSNFALYVVHNKNN*DKIKFTQI 280
           +K+ T  Y  +++Y++    F +Y+V        +KF +I
Sbjct: 2   VKVPTYEYYGFVMYLVSMLGFGVYIVWALTPAPVLKFFEI 41


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 113 SIRVAVSIMVEALRRLVVARTPAKLIQ 193
           ++RVA S+ V  + R   ARTP++L Q
Sbjct: 316 TVRVASSLAVRPVSRNAQARTPSRLEQ 342


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 9   EYSKQIPWR*SYYI*KQSKHRTDSSRLQ 92
           +Y   + WR +Y I +++KH T+S   Q
Sbjct: 284 KYISYLKWRKAYLIIQENKHLTESGLSQ 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,219
Number of Sequences: 5004
Number of extensions: 40837
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)