Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L18
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155           29   3.0  
11_04_0463 - 17980031-17980189,17980269-17980536,17980620-179807...    27   9.2  

>07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155
          Length = 220

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 86  VTTDVMYVVSIRVAVSIMVEALRRLVVARTPAKLIQATTAVMLSL 220
           V T ++  V+I  AV   V A+RR  +ARTPA L      ++  L
Sbjct: 54  VATQLVVTVAIAAAV-YSVPAIRRFFLARTPASLAAFVLVIVAPL 97


>11_04_0463 -
           17980031-17980189,17980269-17980536,17980620-17980758,
           17981498-17981588
          Length = 218

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 543 KNLKDRSFKTVPVNCSDLFYIPLIFCYY*ILRF 445
           K+LKD+  K  P N SDL + P ++  Y  + F
Sbjct: 64  KHLKDKLKKNPPANYSDLLWEPSLWTTYVKIHF 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,541,555
Number of Sequences: 37544
Number of extensions: 206031
Number of successful extensions: 387
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)