Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L16
         (484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0426 + 25125590-25125670,25126171-25126256,25126423-251264...    29   2.6  
02_01_0094 - 667361-668962                                             28   3.4  
02_01_0093 + 655420-657021                                             28   3.4  
11_06_0014 - 19267601-19267831,19268338-19268454,19268733-192688...    27   6.0  

>04_04_0426 +
           25125590-25125670,25126171-25126256,25126423-25126471,
           25126547-25126675,25126973-25127055,25127791-25127959,
           25128038-25128103
          Length = 220

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 250 FTDLVVSIYLYVFRFQKLFIAMTH 321
           F DLVVS+Y Y++     F  MTH
Sbjct: 64  FNDLVVSVYFYLYNNIVFFNLMTH 87


>02_01_0094 - 667361-668962
          Length = 533

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = +1

Query: 70  LMIATSIVNLRFSKTHPYKNLRQGS*E*QKHADIIRRVLWYHRVKGRTYLKTIVNIY--- 240
           L +   ++ L   +  P  NLR    +   + D   RVLWY     RT++  ++  Y   
Sbjct: 235 LHVVMGVLVLTLGQDLPDGNLRSLQKKGDVNRDSFSRVLWYAVTNYRTWIFVLLYGYSMG 294

Query: 241 LHAFTDLVVSIYLY 282
           +   TD V++ Y Y
Sbjct: 295 VELTTDNVIAEYFY 308


>02_01_0093 + 655420-657021
          Length = 533

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = +1

Query: 70  LMIATSIVNLRFSKTHPYKNLRQGS*E*QKHADIIRRVLWYHRVKGRTYLKTIVNIY--- 240
           L +   ++ L   +  P  NLR    +   + D   RVLWY     RT++  ++  Y   
Sbjct: 235 LHVVMGVLVLTLGQDLPDGNLRSLQKKGDVNRDSFSRVLWYAVTNYRTWIFVLLYGYSMG 294

Query: 241 LHAFTDLVVSIYLY 282
           +   TD V++ Y Y
Sbjct: 295 VELTTDNVIAEYFY 308


>11_06_0014 -
           19267601-19267831,19268338-19268454,19268733-19268890,
           19269501-19269612,19269721-19269908,19270344-19270436,
           19270521-19270708,19271635-19271720,19272662-19272811,
           19273930-19274065,19274143-19274222,19275546-19275626,
           19276114-19276245,19276490-19276610,19277457-19277518,
           19277846-19277974,19278514-19278573,19278689-19278772,
           19278852-19279532
          Length = 962

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 340 MTRIQNSFTFLDANIFPSVNMILQRTTWVSILKWFLTCK 456
           ++R+  S T L      +V  + +RTTW +I+ W   C+
Sbjct: 845 LSRVHKSATILQQ--LAAVCSLCERTTWKAIISWDSLCR 881


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,984,114
Number of Sequences: 37544
Number of extensions: 314258
Number of successful extensions: 700
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)