Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_L16
(484 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6077| Best HMM Match : EGF (HMM E-Value=0) 34 0.071
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09) 32 0.22
SB_54922| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0028) 32 0.22
SB_32721| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.38
SB_52147| Best HMM Match : EGF (HMM E-Value=0) 31 0.66
SB_10489| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8) 29 2.0
SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_17200| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) 28 3.5
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_55271| Best HMM Match : SspH (HMM E-Value=7.1) 27 6.1
SB_38880| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 27 6.1
SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_50568| Best HMM Match : EGF (HMM E-Value=0) 27 6.1
SB_24431| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_13393| Best HMM Match : Keratin_B2 (HMM E-Value=0.19) 27 6.1
SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13) 27 8.1
SB_39498| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_38860| Best HMM Match : GRP (HMM E-Value=0.47) 27 8.1
SB_27881| Best HMM Match : Keratin_B2 (HMM E-Value=0.5) 27 8.1
SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_23758| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
>SB_6077| Best HMM Match : EGF (HMM E-Value=0)
Length = 1165
Score = 33.9 bits (74), Expect = 0.071
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = +3
Query: 237 IPPCLHRPRCVNLPLCVPLSKTFHCDDTLCNYTGDDKNTEFFHIPRCKYIPICQHDSSTN 416
I CL RP C+N +C+ L FHC ++G D + +I C P CQH S+
Sbjct: 368 IDECLSRP-CLNNGMCLDLVSDFHC-TCPTGFSGKDCSV---NIDDCADAP-CQHGSTCI 421
Query: 417 DM 422
D+
Sbjct: 422 DL 423
Score = 31.1 bits (67), Expect = 0.50
Identities = 40/137 (29%), Positives = 53/137 (38%), Gaps = 7/137 (5%)
Frame = +3
Query: 30 EPPCELKPVCQILPDDSNKYCKPKIFKNPSLQKSSPRVIRITKACRHHPPCTVVPS---C 200
+ PC C+ L +D +C P F+ + T C + CT V S C
Sbjct: 601 DSPCANGASCEDLINDFRCHC-PAGFQGRTCAVDINECA--TSPCLNEAKCTDVVSGYRC 657
Query: 201 Q-RANVLKNNCEY-IPPCLHRPRCVNLPLCVPLSKTFHCDDTLCN--YTGDDKNTEFFHI 368
R+ CE I C P CVN LCV + F C LC+ Y GD +I
Sbjct: 658 TCRSGYTGTRCERDIDECSSSP-CVNGGLCVDYTNYFEC---LCHPGYGGDRCE---INI 710
Query: 369 PRCKYIPICQHDSSTND 419
C P C H+ + D
Sbjct: 711 DDCANKP-CLHNGNCTD 726
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 33.1 bits (72), Expect = 0.12
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Frame = +3
Query: 135 PRVIRITKACRHHPPCTVVPSC-----QRANVLKNNCEYIPPCLHRPRCVNLPLCVPLSK 299
PRV AC + C +P C VL C + CL+ CVNL +CV L
Sbjct: 1151 PRVFTCLYACVNLSVCVCLPVCFSCVHLSVRVLSPVCPRVFTCLYA--CVNLSVCVCLPV 1208
Query: 300 TFHC 311
F C
Sbjct: 1209 CFSC 1212
Score = 29.1 bits (62), Expect = 2.0
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Frame = +3
Query: 78 SNKYCKPKIFK--NPSLQKSSP---RVIRITKACRHHPPCTVVPSC-----QRANVLKNN 227
S + C P F + S++ SP RV AC H +P C VL
Sbjct: 1090 SVRVCLPVCFSCVHLSVRVLSPVCSRVFTCLYACVHLSVRVCLPVCFSCVHLSVRVLSPV 1149
Query: 228 CEYIPPCLHRPRCVNLPLCVPLSKTFHC 311
C + CL+ CVNL +CV L F C
Sbjct: 1150 CPRVFTCLYA--CVNLSVCVCLPVCFSC 1175
>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
Length = 818
Score = 32.3 bits (70), Expect = 0.22
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +3
Query: 96 PKIFKNPSLQKSSPRVIRITKACRHHPPCTVVPSCQRANVLKNNCEYIPPCLHRPRCVNL 275
PK F +++ SSP K+ + P T+VP+ + +P L P C NL
Sbjct: 8 PKTFVENAIRSSSPSQDESKKSKKEDGPKTLVPAADVPAAKAD--RKVPSELRCPMCKNL 65
Query: 276 ---PLCVPLSKTFHCDDTLCNY 332
+ +P T +CD+ + Y
Sbjct: 66 LTDTVLIPCCGTSYCDECIRTY 87
>SB_54922| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0028)
Length = 116
Score = 32.3 bits (70), Expect = 0.22
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +3
Query: 96 PKIFKNPSLQKSSPRVIRITKACRHHPPCTVVPSCQRANVLKNNCEYIPPCLHRPRCVNL 275
PK F +++ SSP K+ + P T+VP+ + +P L P C NL
Sbjct: 8 PKTFVENAIRSSSPSQDESKKSKKEDGPKTLVPAADVPAAKAD--RKVPSELRCPMCKNL 65
Query: 276 ---PLCVPLSKTFHCDDTLCNY 332
+ +P T +CD+ + Y
Sbjct: 66 LTDTVLIPCCGTSYCDECIRTY 87
>SB_32721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 637
Score = 31.5 bits (68), Expect = 0.38
Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 10/139 (7%)
Frame = +3
Query: 12 TETCTHEPPCELKPVCQILPDDSNKYCKPKIFKNPSLQKSSPRVIRITKACRHHPPCTVV 191
+E C +P C C I+ D +C P FK S +++ + C + C
Sbjct: 485 SEVCLPDP-CHNGGSCYIVDDKFKCFCPPG-FKGDSCERND---FCASDPCLNDGTCKET 539
Query: 192 PS---CQ-RANVLKNNCEYIPPCLHRPRCVNLPLCVPLSKTFHCDDTL------CNYTGD 341
P+ C R NCE C C N LC+ + C L C G
Sbjct: 540 PAGYRCMCRPEFRGKNCETENHCKPVNPCENNGLCIETQDNYRCHCKLGYKGFNCEGIGV 599
Query: 342 DKNTEFFHIPRCKYIPICQ 398
+ + + K +P C+
Sbjct: 600 CGGGRYIGLHKTKPLPTCR 618
>SB_52147| Best HMM Match : EGF (HMM E-Value=0)
Length = 364
Score = 30.7 bits (66), Expect = 0.66
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 225 NCEYI-PPCLHRPRCVNLPLCVPLSKTFHCDDTLCNYTGD 341
NC+ I PC P C N +CVP T++C + +TGD
Sbjct: 277 NCDIIVDPCSANP-CGNHGMCVPRDSTYYCACDV-GFTGD 314
>SB_10489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 211 TYLKTIVNIYLHAFTDLVVSIYLYVFRFQKLFIAMTHYAITPGMT 345
TY T++++YLH T +V Y Y + L++ TP T
Sbjct: 101 TYTYTLLHLYLHPPTPIVTPSYTYTYTLLHLYLHPPTPIPTPSYT 145
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 211 TYLKTIVNIYLHAFTDLVVSIYLYVFRFQKLFIAMTHYAITPGMT 345
TY T++++YLH T + Y Y + L++ TP T
Sbjct: 13 TYTYTLLHLYLHPPTPIATPSYTYTYTLLHLYLHPPTPIGTPSYT 57
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 211 TYLKTIVNIYLHAFTDLVVSIYLYVFRFQKLFIAMTHYAITPGMT 345
TY T++++Y H T + Y Y + L++ +TP T
Sbjct: 79 TYRHTLLHLYTHPPTPIPTPSYTYTYTLLHLYLHPPTPIVTPSYT 123
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 337 GMTRIQNSFTFLDANIFPSVNMILQRTTWVSI 432
G+ I+NS T L AN+ SVN+ L TW +
Sbjct: 1236 GLRIIENSLTVLIANVSRSVNVSLTGDTWYHV 1267
>SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8)
Length = 551
Score = 29.1 bits (62), Expect = 2.0
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Frame = +3
Query: 36 PCELKPVCQILPDDSNKYCKPKIFKNPSLQKSSPRVIRITKACRHHPPCTVVPSCQRANV 215
PCE +P I D +P + + P K P + + +C H P P R N+
Sbjct: 76 PCEQRP--HIARDQCEH--RPHLARIPC--KHRPYLA--SDSCEHRPHLARDPYEHRPNL 127
Query: 216 LKNNCEYIP-----PCLHRP 260
+ CE+ P PC HRP
Sbjct: 128 ARAPCEHRPHLARDPCKHRP 147
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Frame = +3
Query: 96 PKIFKNPSLQKSSPRVIRITKACRHHPPCTVVPSCQRANVLKNNCEYIP-----PCLHRP 260
P + K P Q+ P + R C H P +P R + ++CE+ P P HRP
Sbjct: 70 PHLAKAPCEQR--PHIAR--DQCEHRPHLARIPCKHRPYLASDSCEHRPHLARDPYEHRP 125
Query: 261 RCVNLP 278
P
Sbjct: 126 NLARAP 131
>SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1147
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Frame = +3
Query: 207 ANVLKNNCEYIPPCLHRPRCVNLPLCVPLSKTFHCDDTLCNYTGDDKNTEFFHIPRCKYI 386
AN+ NN I CL P C+ + +F CD + Y I C
Sbjct: 529 ANISSNNSSNINECLADPNLCEHGQCINKAGSFMCDCEI-GYLPTPNGKGCQDINECTEF 587
Query: 387 P-ICQHDSSTN 416
P +C H + N
Sbjct: 588 PDLCHHGTCEN 598
>SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1665
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +3
Query: 252 HRPRCVNLPLCVPLSKTFHCDDTLCNYTGDDKNTEFFHIPRCKYIPIC 395
HR R N + + + + DDTL Y ++ ++ RC P+C
Sbjct: 657 HRRRLYNSNVLLKICERLVRDDTLNTYADQPDCRDYNNVQRCAVQPLC 704
>SB_17200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +3
Query: 189 VPSCQRANVLKNNCEYIPPCLHRPRCVNLPLCVPLSKTFHCDDTLCNYTGDDKNTE-FFH 365
VP+ R NC YI C + C + C + + ++ C Y + + E +
Sbjct: 59 VPTSMRLPQNIENCRYIENCRYIENCRYIENCRYIENCRYIEN--CRYIENCRYIENCRY 116
Query: 366 IPRCKYIPICQH 401
I C+YI C++
Sbjct: 117 IENCRYIENCRY 128
>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
Length = 797
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +3
Query: 87 YCKPKIFKNPSLQKSSPRVIRITKACRHHPPCTVVPSCQRANVLKNNCEYIPPCLHRPR 263
Y P++ ++P + + R+ + RH P P VL + C +P LH PR
Sbjct: 100 YTSPRVHQSPRNKLPAYTTPRVLHSPRHPLPAYFTP-----RVLHSPCTPVPAVLHSPR 153
>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5445
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 207 ANVLKNN-CEYIPPCLHRPRCVNLPLCVPLSKTFHCDDTLCNYTG 338
A +L+++ CE PC P C N +C F+C+ T +TG
Sbjct: 3610 AEMLRDSICEAKAPCSGAP-CKNGGICTENGDLFNCNCTSTGFTG 3653
>SB_55271| Best HMM Match : SspH (HMM E-Value=7.1)
Length = 248
Score = 27.5 bits (58), Expect = 6.1
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Frame = +3
Query: 162 CRHHPPCTVVPSCQRANVLKNNCEYIPP---CLHR--PRCVNLPLCVPLSKTFHCDDTLC 326
CR H P +C+ AN N +Y+PP C + P N+ CD T C
Sbjct: 50 CRKHEPSP--SACEEANTQYGNPDYLPPLRQCSYEGIPNICNVTRTNRAGFDLACDVTSC 107
>SB_38880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 821
Score = 27.5 bits (58), Expect = 6.1
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1
Query: 304 FIAMTHYAITPGMTRIQNSFTFLDANIFPSVNMILQRTT--WVSILKWFLTCKIIINFTN 477
+ + HY +P T + D+ FPS+N + RTT +++L + T + + N
Sbjct: 327 YALLLHYYDSPSYTTHSLALLVYDSPSFPSINDLSSRTTSLRLALLHYQFTTRPLSLLVN 386
Query: 478 D 480
D
Sbjct: 387 D 387
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 27.5 bits (58), Expect = 6.1
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Frame = +3
Query: 168 HHPPCTVVPSCQRANVLKNNCEYIPPCLHRPRCVNLPLCVPLSKT--FHCDDTLCNYTGD 341
HHP TV+ ++ + ++ Y ++ P ++P C L T + + Y
Sbjct: 449 HHPYPTVIIHTPPSSSIPHHHPYTTVLIYTPPSSSIPHCHHLYPTVIIYTPPSSSIYYRH 508
Query: 342 DKNTEFFHIPRCKYIPICQH 401
T H P IP C H
Sbjct: 509 PYPTVIIHTPPSSSIPHCYH 528
>SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1408
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 180 CTVVPSCQRANVLKNNCEYIPPCLHRPRCVNL 275
CT + ++ LK C I PCL+ RC+++
Sbjct: 892 CTANYTGRQCEYLKTLCRPINPCLNGGRCIDI 923
>SB_50568| Best HMM Match : EGF (HMM E-Value=0)
Length = 792
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 180 CTVVPSCQRANVLKNNCEYIPPCLHRPRCVNL 275
CT + ++ LK C I PCL+ RC+++
Sbjct: 221 CTANYTGRQCEYLKTLCRPINPCLNGGRCIDI 252
>SB_24431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 27.5 bits (58), Expect = 6.1
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1
Query: 304 FIAMTHYAITPGMTRIQNSFTFLDANIFPSVNMILQRTT--WVSILKWFLTCKIIINFTN 477
+ + HY +P T + D+ FPS+N + RTT +++L + T + + N
Sbjct: 13 YALLLHYYDSPSYTTRSLALLVYDSPSFPSINDLSSRTTSLRLALLHYQFTTRPLSLLVN 72
Query: 478 D 480
D
Sbjct: 73 D 73
>SB_13393| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)
Length = 163
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 204 RANVLKNNCEYIPPCLHRPRCVNLPLCVPLSKTFHCDDTLC 326
R +++ N C + C + C ++ LC L T CD TLC
Sbjct: 21 RGSMVSNKCCDLTLCYNLTLCRDMTLCYNL--TLCCDLTLC 59
>SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13)
Length = 1052
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = +3
Query: 21 CTHEPPCELKPVCQILPDDSNKYCKPKIFKNPSLQKSSPRVIRITKACRHHPPCTVVPSC 200
C ++PP L ++ D +YC+ + NP + + R+ +AC + P C
Sbjct: 376 CENQPPTHLGAEKRM--DFLFEYCRSAMSWNPGVGQPRRYCFRVQQACGFYAPQAAKDKC 433
Query: 201 QRA 209
+ +
Sbjct: 434 KNS 436
>SB_39498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 150 ITKACRHHPPCTVVPSCQRA--NVLKNNCEYIPPCLHRPRC 266
+ K+C++ P +V SCQ ++L N+C+ + P L C
Sbjct: 412 LVKSCQYVGPSLLVNSCQDVGPSLLVNSCQDVGPSLLVKSC 452
>SB_38860| Best HMM Match : GRP (HMM E-Value=0.47)
Length = 212
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Frame = +3
Query: 63 ILPDDSNKYCKPKIFKNPSLQKS------SPRVIRITKACRHHPPCTVVPSCQRANVLKN 224
+ P + + IF+ P+++ S +P+ + K C P +PS A +
Sbjct: 146 VYPKSKKESKRAPIFRRPAIEHSEIFNASTPKNVTFRKYCEGLPKELRLPSESTATTFRK 205
Query: 225 NCEYI 239
CEY+
Sbjct: 206 YCEYL 210
>SB_27881| Best HMM Match : Keratin_B2 (HMM E-Value=0.5)
Length = 168
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Frame = +3
Query: 159 ACRHHPPCTVV--PSCQRANVLKNNCEYIPPC--------LHRPRCVNLPL 281
+C +HP T++ PSC V + Y PPC L++P C+N P+
Sbjct: 117 SCINHPVSTILYQPSCINHPV--STIPYQPPCINHPVSTILYQPSCINHPV 165
>SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1409
Score = 27.1 bits (57), Expect = 8.1
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 16/101 (15%)
Frame = +3
Query: 219 KNNCEYIPPCLHRPRCVNLP-----LCVPLSKTFHCDDT----LCNY--TGDDKNTEFFH 365
KN C+ + PCL+ +C+N P C+ HC+ L Y G+DKN
Sbjct: 1270 KNECK-VNPCLNNGKCINTPGSYKCNCIDEYTGKHCETAKYKELGCYKDNGNDKNKPRRT 1328
Query: 366 IPR--CKYIP-ICQHDSS--TNDMGQHIEMVSHMQNNYKFY 473
IP + P I HD S N+ +H + + +FY
Sbjct: 1329 IPEMIANFRPQIDWHDMSKTVNECAKHAKEKGYEIFGVQFY 1369
>SB_23758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = -2
Query: 429 ADPCRSLKNHVDRWEYICI*ECERILYSCHPRCNCIMCHRNEKFLKAEH 283
A R+L +H+ + ++C + +R + S N + H+N K K ++
Sbjct: 231 ASVLRNLNSHLGKSSFLCNGKLQREMISARDASNQVYAHKNIKPRKLDY 279
>SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 114 PSLQKSSPRVIRITKACRHHPPCTVVPSCQRANVLKNNCEYIPPCLHRP 260
P+ +++ I K C HHP T +P+ RAN +I PC H P
Sbjct: 569 PTSARTNTAHISPYKHCPHHPVQT-LPTSARANT-----AHISPCKHCP 611
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,930,326
Number of Sequences: 59808
Number of extensions: 402676
Number of successful extensions: 1020
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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