Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_L14
(331 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P05388 Cluster: 60S acidic ribosomal protein P0; n=171;... 145 1e-34
UniRef50_Q9PV90 Cluster: 60S acidic ribosomal protein P0; n=11; ... 140 4e-33
UniRef50_Q4KTH7 Cluster: 60S acidic ribosomal protein P0; n=3; M... 116 1e-25
UniRef50_UPI0000499842 Cluster: 60S acidic ribosomal protein P0;... 101 2e-21
UniRef50_P57691 Cluster: 60S acidic ribosomal protein P0-3; n=10... 96 1e-19
UniRef50_O04204 Cluster: 60S acidic ribosomal protein P0-1; n=27... 93 1e-18
UniRef50_Q94660 Cluster: 60S acidic ribosomal protein P0; n=14; ... 87 9e-17
UniRef50_P22685 Cluster: 60S acidic ribosomal protein P0; n=2; D... 65 2e-10
UniRef50_Q7QU12 Cluster: 60S acidic ribosomal protein P0; n=1; G... 65 3e-10
UniRef50_Q8TX50 Cluster: Acidic ribosomal protein P0 homolog; n=... 63 1e-09
UniRef50_O94085 Cluster: Putative uncharacterized protein YLR339... 58 4e-08
UniRef50_Q98S65 Cluster: 60S acidic ribosomal protein P0; n=1; G... 57 7e-08
UniRef50_Q9U7P1 Cluster: 60S acidic ribosomal protein P0; n=1; E... 53 1e-06
UniRef50_Q22HK6 Cluster: 60S acidic ribosomal protein P0; n=2; T... 53 1e-06
UniRef50_A2EES5 Cluster: 60S acidic ribosomal protein P0; n=6; T... 53 1e-06
UniRef50_Q16RH9 Cluster: Temporarily assignedprotein name protei... 52 2e-06
UniRef50_Q6CW90 Cluster: Similarities with sp|O94085 Saccharomyc... 52 3e-06
UniRef50_Q8SRJ7 Cluster: 60S ACIDIC RIBOSOMAL PROTEIN P0; n=1; E... 51 6e-06
UniRef50_Q3LWA7 Cluster: Ribosomal protein L10; n=1; Bigelowiell... 47 7e-05
UniRef50_Q52H32 Cluster: 60S acidic ribosomal protein P0; n=4; E... 46 1e-04
UniRef50_A0DDF2 Cluster: 60S acidic ribosomal protein P0; n=6; P... 46 1e-04
UniRef50_Q7R447 Cluster: GLP_254_32992_33747; n=1; Giardia lambl... 46 2e-04
UniRef50_UPI0000ECA2B0 Cluster: mRNA turnover protein 4 homolog.... 42 0.003
UniRef50_Q7K1Q7 Cluster: LD47064p; n=7; Endopterygota|Rep: LD470... 41 0.006
UniRef50_Q4Q0U9 Cluster: 60S acidic ribosomal protein, putative;... 40 0.011
UniRef50_Q7S302 Cluster: mRNA turnover protein 4 homolog; n=17; ... 40 0.011
UniRef50_P26796 Cluster: 60S acidic ribosomal protein P0; n=12; ... 38 0.032
UniRef50_A3CSJ7 Cluster: Ribosomal protein L10; n=4; Methanomicr... 36 0.17
UniRef50_A7Q681 Cluster: Chromosome undetermined scaffold_55, wh... 34 0.69
UniRef50_Q2Y4X9 Cluster: Acidic ribosomal protein P0; n=1; uncul... 33 0.92
UniRef50_Q58J68 Cluster: Mitochondrial SBP40; n=1; Solanum tuber... 33 1.2
UniRef50_O28781 Cluster: Acidic ribosomal protein P0 homolog; n=... 32 2.1
UniRef50_A5C7V3 Cluster: Putative uncharacterized protein; n=2; ... 32 2.8
UniRef50_A5BWW8 Cluster: Putative uncharacterized protein; n=1; ... 32 2.8
UniRef50_UPI0000F1E6A3 Cluster: PREDICTED: similar to Sema4b-pro... 31 3.7
UniRef50_A6D6W3 Cluster: Putative uncharacterized protein; n=1; ... 31 3.7
UniRef50_A6C829 Cluster: Putative uncharacterized protein; n=1; ... 31 3.7
UniRef50_A3TZF9 Cluster: Acyl-CoA synthase; n=1; Oceanicola bats... 31 4.9
UniRef50_A1G909 Cluster: Putative uncharacterized protein; n=6; ... 31 4.9
UniRef50_A0BLJ1 Cluster: Chromosome undetermined scaffold_114, w... 31 4.9
UniRef50_A7TMY8 Cluster: Putative uncharacterized protein; n=1; ... 31 6.5
UniRef50_Q0SD08 Cluster: Possible flavodoxin; n=1; Rhodococcus s... 30 8.5
UniRef50_Q19302 Cluster: Putative uncharacterized protein; n=2; ... 30 8.5
UniRef50_Q0CSD9 Cluster: Predicted protein; n=1; Aspergillus ter... 30 8.5
>UniRef50_P05388 Cluster: 60S acidic ribosomal protein P0; n=171;
Eukaryota|Rep: 60S acidic ribosomal protein P0 - Homo
sapiens (Human)
Length = 317
Score = 145 bits (352), Expect = 1e-34
Identities = 66/80 (82%), Positives = 76/80 (95%)
Frame = +2
Query: 92 RIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLETNPAL 271
+IIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKN+MMRKAI+ HLE NPAL
Sbjct: 16 KIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPAL 75
Query: 272 EKLLPHIKGNVGFVFTRGDL 331
EKLLPHI+GNVGFVFT+ DL
Sbjct: 76 EKLLPHIRGNVGFVFTKEDL 95
Score = 35.5 bits (78), Expect = 0.23
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +1
Query: 46 MGREDKATWKSNYFVQNHPTVGRIPKMFHSG 138
M RED+ATWKSNYF++ + PK F G
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVG 31
>UniRef50_Q9PV90 Cluster: 60S acidic ribosomal protein P0; n=11;
Eukaryota|Rep: 60S acidic ribosomal protein P0 - Danio
rerio (Zebrafish) (Brachydanio rerio)
Length = 319
Score = 140 bits (340), Expect = 4e-33
Identities = 63/80 (78%), Positives = 75/80 (93%)
Frame = +2
Query: 92 RIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLETNPAL 271
+IIQLLD++PKCFIVGADNVGS+QMQ IR+SLRG ++VLMGKN+MMRKAI+ HLE NPAL
Sbjct: 16 KIIQLLDDFPKCFIVGADNVGSKQMQTIRLSLRGKAVVLMGKNTMMRKAIRGHLENNPAL 75
Query: 272 EKLLPHIKGNVGFVFTRGDL 331
E+LLPHI+GNVGFVFT+ DL
Sbjct: 76 ERLLPHIRGNVGFVFTKEDL 95
Score = 35.9 bits (79), Expect = 0.17
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +1
Query: 46 MGREDKATWKSNYFVQNHPTVGRIPKMFHSG 138
M RED+ATWKSNYF++ + PK F G
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDFPKCFIVG 31
>UniRef50_Q4KTH7 Cluster: 60S acidic ribosomal protein P0; n=3;
Metazoa|Rep: 60S acidic ribosomal protein P0 - Suberites
domuncula (Sponge)
Length = 313
Score = 116 bits (279), Expect = 1e-25
Identities = 50/80 (62%), Positives = 65/80 (81%)
Frame = +2
Query: 92 RIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLETNPAL 271
R++ L DEY + +V DNVGS+QMQQIRISLRG + +LMGKN+ +RKA++ HLE NP L
Sbjct: 16 RLLSLFDEYKRVLLVNVDNVGSKQMQQIRISLRGKATILMGKNTTIRKALRGHLEQNPNL 75
Query: 272 EKLLPHIKGNVGFVFTRGDL 331
EK+LPH+KGN+GFVFT D+
Sbjct: 76 EKVLPHVKGNIGFVFTHEDM 95
Score = 32.3 bits (70), Expect = 2.1
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 46 MGREDKATWKSNYFVQ 93
MGREDKA WKSNY ++
Sbjct: 1 MGREDKAAWKSNYVMR 16
>UniRef50_UPI0000499842 Cluster: 60S acidic ribosomal protein P0;
n=3; Entamoeba histolytica HM-1:IMSS|Rep: 60S acidic
ribosomal protein P0 - Entamoeba histolytica HM-1:IMSS
Length = 316
Score = 101 bits (243), Expect = 2e-21
Identities = 47/77 (61%), Positives = 59/77 (76%)
Frame = +2
Query: 101 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLETNPALEKL 280
+LL+EY + +V DNVGS Q Q IR LRG +MGKN+++RKAIK+ ET P LE+L
Sbjct: 26 KLLEEYKQVVVVKCDNVGSSQFQTIRKELRGTCEFVMGKNTLIRKAIKNQAETQPELEEL 85
Query: 281 LPHIKGNVGFVFTRGDL 331
LPHIKGNVGF+FT+GDL
Sbjct: 86 LPHIKGNVGFIFTKGDL 102
>UniRef50_P57691 Cluster: 60S acidic ribosomal protein P0-3; n=10;
Eukaryota|Rep: 60S acidic ribosomal protein P0-3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 323
Score = 96.3 bits (229), Expect = 1e-19
Identities = 44/82 (53%), Positives = 62/82 (75%), Gaps = 2/82 (2%)
Frame = +2
Query: 92 RIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLET--NP 265
++ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKN+MM+++++ H E N
Sbjct: 16 KLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNT 75
Query: 266 ALEKLLPHIKGNVGFVFTRGDL 331
A+ LLP ++GNVG +FT+GDL
Sbjct: 76 AILNLLPLLQGNVGLIFTKGDL 97
>UniRef50_O04204 Cluster: 60S acidic ribosomal protein P0-1; n=27;
Eukaryota|Rep: 60S acidic ribosomal protein P0-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 317
Score = 93.1 bits (221), Expect = 1e-18
Identities = 43/82 (52%), Positives = 61/82 (74%), Gaps = 2/82 (2%)
Frame = +2
Query: 92 RIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLET--NP 265
++ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGKN+MM+++++ H + N
Sbjct: 17 KLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQ 76
Query: 266 ALEKLLPHIKGNVGFVFTRGDL 331
A LLP ++GNVG +FT+GDL
Sbjct: 77 AFLSLLPLLQGNVGLIFTKGDL 98
>UniRef50_Q94660 Cluster: 60S acidic ribosomal protein P0; n=14;
Apicomplexa|Rep: 60S acidic ribosomal protein P0 -
Plasmodium falciparum (isolate 7G8)
Length = 316
Score = 86.6 bits (205), Expect = 9e-17
Identities = 40/80 (50%), Positives = 56/80 (70%)
Frame = +2
Query: 92 RIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLETNPAL 271
++ L+ +Y K IV DNVGS QM +R SLRG + +LMGKN+ +R A+K +L+ P +
Sbjct: 16 KLSSLIQQYSKILIVHVDNVGSNQMASVRKSLRGKATILMGKNTRIRTALKKNLQAVPQI 75
Query: 272 EKLLPHIKGNVGFVFTRGDL 331
EKLLP +K N+GFVF + DL
Sbjct: 76 EKLLPLVKLNMGFVFCKDDL 95
>UniRef50_P22685 Cluster: 60S acidic ribosomal protein P0; n=2;
Dictyostelium discoideum|Rep: 60S acidic ribosomal
protein P0 - Dictyostelium discoideum (Slime mold)
Length = 305
Score = 65.3 bits (152), Expect = 2e-10
Identities = 31/77 (40%), Positives = 48/77 (62%)
Frame = +2
Query: 101 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLETNPALEKL 280
+L Y K + AD VGS Q+Q+IR S+RG VLMGK +M+RK I+D ++ P L+ L
Sbjct: 18 KLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVLMGKKTMIRKVIRDLADSKPELDAL 77
Query: 281 LPHIKGNVGFVFTRGDL 331
++K N +F + ++
Sbjct: 78 NTYLKQNTCIIFCKDNI 94
>UniRef50_Q7QU12 Cluster: 60S acidic ribosomal protein P0; n=1;
Giardia lamblia ATCC 50803|Rep: 60S acidic ribosomal
protein P0 - Giardia lamblia ATCC 50803
Length = 326
Score = 64.9 bits (151), Expect = 3e-10
Identities = 36/79 (45%), Positives = 53/79 (67%)
Frame = +2
Query: 92 RIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLETNPAL 271
++ + L EY K +V DNV S Q+ QIR LRG + +L GKN+++++ I + L+ + L
Sbjct: 19 KLERCLTEYKKIVLVSVDNVRSFQIAQIRRLLRGKAELLAGKNTIIKRVI-NQLD-DDKL 76
Query: 272 EKLLPHIKGNVGFVFTRGD 328
+ LLP+IK NV FVFT GD
Sbjct: 77 KNLLPYIKLNVAFVFTNGD 95
>UniRef50_Q8TX50 Cluster: Acidic ribosomal protein P0 homolog; n=4;
Euryarchaeota|Rep: Acidic ribosomal protein P0 homolog -
Methanopyrus kandleri
Length = 357
Score = 62.9 bits (146), Expect = 1e-09
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Frame = +2
Query: 101 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGH-SIVLMGKNSMMRKAIKDHLETNPALEK 277
+L+DEY +V + + + Q+Q+IR LR +I+ M +N++MR A+++ L+ P LE
Sbjct: 30 ELMDEYENVGLVDLEGIPAPQLQEIRAKLRERDTIIRMSRNTLMRIALEEKLDERPELEP 89
Query: 278 LLPHIKGNVGFVFTRGD 328
LL +I+G V F+FT D
Sbjct: 90 LLDYIEGPVAFIFTNLD 106
>UniRef50_O94085 Cluster: Putative uncharacterized protein YLR339C;
n=5; Saccharomycetales|Rep: Putative uncharacterized
protein YLR339C - Saccharomyces cerevisiae (Baker's
yeast)
Length = 183
Score = 58.0 bits (134), Expect = 4e-08
Identities = 32/70 (45%), Positives = 39/70 (55%)
Frame = -2
Query: 318 VKTKPTFPLM*GSSFSRAGFVSRWSLMAFLIMLFLPMSTML*PRNEXXXXXXXCEPTLSA 139
VKTKPT PL G++FS++G + LMA L M+FLP+ T P N E TLS
Sbjct: 62 VKTKPTLPLTKGNNFSKSGKSDKKPLMALLTMVFLPIKTTALPLNSFLTSCICWEETLST 121
Query: 138 PTMKHFGYSS 109
PT YSS
Sbjct: 122 PTTNKDLYSS 131
>UniRef50_Q98S65 Cluster: 60S acidic ribosomal protein P0; n=1;
Guillardia theta|Rep: 60S acidic ribosomal protein P0 -
Guillardia theta (Cryptomonas phi)
Length = 297
Score = 57.2 bits (132), Expect = 7e-08
Identities = 23/75 (30%), Positives = 47/75 (62%)
Frame = +2
Query: 104 LLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLETNPALEKLL 283
L ++ + +V +N+ S+Q+++ + L SI++ GKN++++K ++D L+ + ++L
Sbjct: 19 LFSKFSRLIVVKIENLNSEQIKKCKRLLNNTSILITGKNTLIKKVLRDRLKNSTLSNEIL 78
Query: 284 PHIKGNVGFVFTRGD 328
I GNV F+FT D
Sbjct: 79 TKINGNVSFIFTNED 93
>UniRef50_Q9U7P1 Cluster: 60S acidic ribosomal protein P0; n=1;
Eufolliculina uhligi|Rep: 60S acidic ribosomal protein
P0 - Eufolliculina uhligi
Length = 324
Score = 52.8 bits (121), Expect = 1e-06
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 17/93 (18%)
Frame = +2
Query: 104 LLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHL-ETN------ 262
L++E P+ I A+NVGS+Q+Q +R LR + +L GKN+++R +K L E N
Sbjct: 13 LIEEAPRILICEANNVGSKQLQDLRRVLRNKATILFGKNTLIRAGLKHRLTEPNAEDEDF 72
Query: 263 ----------PALEKLLPHIKGNVGFVFTRGDL 331
P LE L+P ++GNV +F ++
Sbjct: 73 EKRKNTWTPKPELEHLIPLLRGNVCLIFCHAEM 105
>UniRef50_Q22HK6 Cluster: 60S acidic ribosomal protein P0; n=2;
Tetrahymena thermophila|Rep: 60S acidic ribosomal
protein P0 - Tetrahymena thermophila SB210
Length = 324
Score = 52.8 bits (121), Expect = 1e-06
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 16/91 (17%)
Frame = +2
Query: 92 RIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIK---DHLETN 262
R +LL +Y + +NVGS Q+QQIR SL ++I+++GKN+++RKA++ L T+
Sbjct: 18 RFYELLSKYDSIALCTLENVGSLQLQQIRRSLGSNNIMVIGKNTVVRKAVQLKSADLPTD 77
Query: 263 -------------PALEKLLPHIKGNVGFVF 316
P L L+PH+K + +VF
Sbjct: 78 SKYDWYRQFGAPKPQLASLIPHLKNKIAYVF 108
>UniRef50_A2EES5 Cluster: 60S acidic ribosomal protein P0; n=6;
Trichomonas vaginalis G3|Rep: 60S acidic ribosomal
protein P0 - Trichomonas vaginalis G3
Length = 318
Score = 52.8 bits (121), Expect = 1e-06
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +2
Query: 104 LLDEYPKCFIVGADNVGSQQMQQIRISLRGHSI-VLMGKNSMMRKAIKDHLETNPALEKL 280
L +Y K +V + NV + Q+ IR L H VL GKNS+MR+A+ E P + +L
Sbjct: 21 LFRKYHKVVVVTSMNVTANQLLNIRAGLAEHGCEVLFGKNSLMRRAVDQLKEELPGIRQL 80
Query: 281 LPHIKGNVGFVFTRGD 328
H+ G +FT G+
Sbjct: 81 EEHLYHGAGLIFTNGN 96
>UniRef50_Q16RH9 Cluster: Temporarily assignedprotein name protein;
n=2; Culicidae|Rep: Temporarily assignedprotein name
protein - Aedes aegypti (Yellowfever mosquito)
Length = 1309
Score = 52.4 bits (120), Expect = 2e-06
Identities = 24/37 (64%), Positives = 29/37 (78%)
Frame = +2
Query: 221 SMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDL 331
S+ ++AI+ HLE N L KLLPHIK VGFVFT+GDL
Sbjct: 689 SIHQQAIRVHLEVNSDLRKLLPHIKSYVGFVFTKGDL 725
>UniRef50_Q6CW90 Cluster: Similarities with sp|O94085 Saccharomyces
cerevisiae YLR339CP; n=1; Kluyveromyces lactis|Rep:
Similarities with sp|O94085 Saccharomyces cerevisiae
YLR339CP - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 309
Score = 51.6 bits (118), Expect = 3e-06
Identities = 26/71 (36%), Positives = 38/71 (53%)
Frame = -1
Query: 319 GEDKADISLDVRKQFFESWICFKMVLDGFPHHAVFAHEHNAVTTQ*NTDLLHLLRAYIVR 140
GED+ +++LD R+Q F W D H V H+ N+ +Q +D +HLL +IV
Sbjct: 236 GEDETNVTLDERQQLFVVWEVRDETSDSSSDHGVLTHQDNSSASQVLSDFVHLLGRHIVN 295
Query: 139 THYETFWVFVQ 107
T+ E VF Q
Sbjct: 296 TNNEDRLVFFQ 306
>UniRef50_Q8SRJ7 Cluster: 60S ACIDIC RIBOSOMAL PROTEIN P0; n=1;
Encephalitozoon cuniculi|Rep: 60S ACIDIC RIBOSOMAL
PROTEIN P0 - Encephalitozoon cuniculi
Length = 290
Score = 50.8 bits (116), Expect = 6e-06
Identities = 30/83 (36%), Positives = 49/83 (59%)
Frame = +2
Query: 80 ITSFRIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLET 259
+T R +L + Y + +V +NV S Q++ I+ G++ +LMGKNS +R+AI D
Sbjct: 36 LTYERARKLFETYSRFALVKIENVVSTQLKDIKRQWGGNAELLMGKNSAIRRAIAD--LG 93
Query: 260 NPALEKLLPHIKGNVGFVFTRGD 328
P L + +KG+V FVF +G+
Sbjct: 94 KPELSGVYDLVKGDVCFVFFKGN 116
>UniRef50_Q3LWA7 Cluster: Ribosomal protein L10; n=1; Bigelowiella
natans|Rep: Ribosomal protein L10 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 251
Score = 47.2 bits (107), Expect = 7e-05
Identities = 23/80 (28%), Positives = 43/80 (53%)
Frame = +2
Query: 92 RIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLETNPAL 271
+ I LL+ Y IV +N+ S+Q+ IR LRG S +++GK S + ++++
Sbjct: 11 KFISLLNSYDTMVIVNMNNIRSKQIHDIRKHLRGTSEIVVGKKSFLSYLLQNNKLEMSRW 70
Query: 272 EKLLPHIKGNVGFVFTRGDL 331
+ ++ N+G +FT +L
Sbjct: 71 MSVKEYLSDNIGLIFTNSNL 90
>UniRef50_Q52H32 Cluster: 60S acidic ribosomal protein P0; n=4;
Euplotes|Rep: 60S acidic ribosomal protein P0 - Euplotes
minuta
Length = 333
Score = 46.4 bits (105), Expect = 1e-04
Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 18/98 (18%)
Frame = +2
Query: 92 RIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR-GHSIVLMGKNSMMRKAIKDHL----- 253
R+ + D+Y + +V DN+ ++Q+ R LR +S++LMG+N++++ A++ +
Sbjct: 16 RVYNVFDKYTRALLVKCDNISARQIHACRKELRSNNSLMLMGENTLIKAALQKRISKPIE 75
Query: 254 -ETN-----------PALEKLLPHIKGNVGFVFTRGDL 331
E++ P +E L+ +KGN+G +FT DL
Sbjct: 76 SESDFEERSKTWTPIPHMEPLVRLLKGNLGIIFTNHDL 113
>UniRef50_A0DDF2 Cluster: 60S acidic ribosomal protein P0; n=6;
Paramecium tetraurelia|Rep: 60S acidic ribosomal protein
P0 - Paramecium tetraurelia
Length = 323
Score = 46.4 bits (105), Expect = 1e-04
Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 50 VGRTRLPGSPITSFR-IIQLLDEYPKCFIVGADNVGSQQMQQI-RISLRGHSIVLMGKNS 223
+G+ T F+ I +LL +Y + IVG NVGS+Q+Q I RI + ++++++GKN+
Sbjct: 1 MGKKETKDKKPTQFKKIYELLSKYTQVIIVGLANVGSKQVQDIRRILAKRNALLVIGKNT 60
Query: 224 MMRKAIKDHLETNP 265
+ +K + ++ P
Sbjct: 61 LFKKVLATRVQELP 74
>UniRef50_Q7R447 Cluster: GLP_254_32992_33747; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_254_32992_33747 - Giardia lamblia
ATCC 50803
Length = 251
Score = 46.0 bits (104), Expect = 2e-04
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Frame = +2
Query: 92 RIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLETNPAL 271
+I + D Y +++ + N+ S QQ+R S++G++ + MGKN +MR A+ E +
Sbjct: 39 QIREAFDTYDTVYVIDSHNMTSSSWQQLRTSMKGYARIFMGKNQLMRYALGKTEEESYRT 98
Query: 272 E--KLLPHIKGNVGFVFT 319
+ +L +KG G +FT
Sbjct: 99 KTWQLGRLLKGMTGLLFT 116
>UniRef50_UPI0000ECA2B0 Cluster: mRNA turnover protein 4 homolog.;
n=3; Gallus gallus|Rep: mRNA turnover protein 4 homolog.
- Gallus gallus
Length = 249
Score = 41.5 bits (93), Expect = 0.003
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Frame = +2
Query: 23 VPTSLNPRWVGRTRLPGSPITSFRII-----QLLDEYPKCFIVGADNVGSQQMQQIRISL 187
+P S R V TR P + + + + + +D Y FI N+ + +++ +R +
Sbjct: 8 MPKSKRDRKVSLTRTPRKGLEAKQALIAELRRCVDTYKHIFIFSVANMRNNKLKDVRNAW 67
Query: 188 RGHSIVLMGKNSMMRKAI--KDHLETNPALEKLLPHIKGNVGFVFT 319
+ HS + GKN +M A+ + E L ++ H++G VG +FT
Sbjct: 68 K-HSRIFFGKNKVMMVALGREPSSEYRENLHQVSKHLRGEVGLLFT 112
>UniRef50_Q7K1Q7 Cluster: LD47064p; n=7; Endopterygota|Rep: LD47064p
- Drosophila melanogaster (Fruit fly)
Length = 256
Score = 40.7 bits (91), Expect = 0.006
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +2
Query: 113 EYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAI--KDHLETNPALEKLLP 286
+YP F+ N+ + ++ +R L+ +S + GKN +M+ + E P L KL
Sbjct: 36 KYPNIFVFQVQNMRNSLLKDLRQELKKNSRFIFGKNRVMQIGLGRTKSEEVEPELHKLSK 95
Query: 287 HIKGNVGFVFT 319
+ G VG +FT
Sbjct: 96 RLTGQVGLLFT 106
>UniRef50_Q4Q0U9 Cluster: 60S acidic ribosomal protein, putative;
n=5; Trypanosomatidae|Rep: 60S acidic ribosomal protein,
putative - Leishmania major
Length = 227
Score = 39.9 bits (89), Expect = 0.011
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +2
Query: 92 RIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLET--NP 265
RI + L++Y + N+ + +QQIR G S + +G N +M AI E+
Sbjct: 29 RIREALEDYSDVYTFQLHNIRTNILQQIREERAGDSRIFLGNNKVMMIAIGRDEESAQRQ 88
Query: 266 ALEKLLPHIKGNVGFVFT 319
L KL P + G G +FT
Sbjct: 89 NLHKLSPFLTGLCGLLFT 106
>UniRef50_Q7S302 Cluster: mRNA turnover protein 4 homolog; n=17;
Ascomycota|Rep: mRNA turnover protein 4 homolog -
Neurospora crassa
Length = 252
Score = 39.9 bits (89), Expect = 0.011
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +2
Query: 95 IIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLETNPA-- 268
I + + Y CF+ DN+ + ++ +R L I GK + +A+ E A
Sbjct: 30 IRECIPNYQHCFVFSIDNMRNNYLKDVRKELNDCRI-FFGKTKLTARALGTTPEDAQADG 88
Query: 269 LEKLLPHIKGNVGFVFTRGD 328
L+KL ++ G+VG +FT D
Sbjct: 89 LDKLSKYLSGSVGLIFTNRD 108
>UniRef50_P26796 Cluster: 60S acidic ribosomal protein P0; n=12;
Trypanosomatidae|Rep: 60S acidic ribosomal protein P0 -
Trypanosoma cruzi
Length = 323
Score = 38.3 bits (85), Expect = 0.032
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Frame = +2
Query: 107 LDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLETN--PALEKL 280
L +Y + DNV SQQ+ +R LRG ++MGK ++ +K ++ E A +KL
Sbjct: 19 LTKYGRVLFCLMDNVRSQQVHDVRRDLRGLGELVMGKKTLQKKIVERRAEDKKASAYDKL 78
Query: 281 LPH-------IKGNVGFVFTRGDL 331
L + + GN +FT ++
Sbjct: 79 LYNTCIEKKLLCGNTALIFTNEEI 102
>UniRef50_A3CSJ7 Cluster: Ribosomal protein L10; n=4;
Methanomicrobiales|Rep: Ribosomal protein L10 -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 346
Score = 35.9 bits (79), Expect = 0.17
Identities = 20/71 (28%), Positives = 38/71 (53%)
Frame = +2
Query: 107 LDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLETNPALEKLLP 286
++E+ +V + + Q+QQIR +LRG + V M +N+++ A+ E ++ L
Sbjct: 23 IEEHTLVGVVDMYGIPASQVQQIRRNLRGTARVKMARNTLIEHALN---ELGGSVATLND 79
Query: 287 HIKGNVGFVFT 319
H +G +FT
Sbjct: 80 HAEGQSALIFT 90
>UniRef50_A7Q681 Cluster: Chromosome undetermined scaffold_55, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_55, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 223
Score = 33.9 bits (74), Expect = 0.69
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +2
Query: 197 SIVLMGKNSMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDL 331
S+ M K+S+ +A K NP L+P + GNVG +FT+GDL
Sbjct: 38 SVFAMVKHSIRLRAEKTG---NPVFLNLVPLLVGNVGPIFTKGDL 79
>UniRef50_Q2Y4X9 Cluster: Acidic ribosomal protein P0; n=1;
uncultured archaeon|Rep: Acidic ribosomal protein P0 -
uncultured archaeon
Length = 313
Score = 33.5 bits (73), Expect = 0.92
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 95 IIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKA 238
I LL Y + +GS+Q+Q+IR RG +++ + KNSM+ ++
Sbjct: 19 INSLLGSYDTIGLAKIRGLGSKQLQRIRKEFRGDALLKVSKNSMIARS 66
>UniRef50_Q58J68 Cluster: Mitochondrial SBP40; n=1; Solanum
tuberosum|Rep: Mitochondrial SBP40 - Solanum tuberosum
(Potato)
Length = 387
Score = 33.1 bits (72), Expect = 1.2
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 101 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGH--SIVLMGKNSMMRKAIKDH 250
+ +DEY CF + A+NV Q + +SL+G+ S+ GKN ++ + H
Sbjct: 166 EFMDEYQSCFHIVAENVNFVQGLKRNVSLKGNVKSVYPKGKNFVLDENDNQH 217
>UniRef50_O28781 Cluster: Acidic ribosomal protein P0 homolog; n=1;
Archaeoglobus fulgidus|Rep: Acidic ribosomal protein P0
homolog - Archaeoglobus fulgidus
Length = 339
Score = 32.3 bits (70), Expect = 2.1
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 95 IIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAI 241
I +++ P IV NV + QMQ+IR RG + + + KN+++ +A+
Sbjct: 19 IKRMISSKPVVAIVSFRNVPAGQMQKIRREFRGKAEIKVVKNTLLERAL 67
>UniRef50_A5C7V3 Cluster: Putative uncharacterized protein; n=2;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 742
Score = 31.9 bits (69), Expect = 2.8
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Frame = +2
Query: 41 PRWVGRTRLPGSPITSFRIIQLLDEYPKCF---IVGADNVGSQQMQQIRISLRGHSIVLM 211
P WV T L G + R I Y F + D G + + R +V +
Sbjct: 534 PFWVRFTDLRGGHVLDDRPIVHPMPYWGIFPFRMRFTDLHGGHSFYFLGLVFRVSFLVWL 593
Query: 212 GKNSMMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDL 331
K + + + H E NP L+P + GNVG + T+GDL
Sbjct: 594 PKRLFSQHSSRLHAEKTGNPVFLNLVPLLVGNVGLISTKGDL 635
>UniRef50_A5BWW8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 208
Score = 31.9 bits (69), Expect = 2.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 260 NPALEKLLPHIKGNVGFVFTRGDL 331
NP L+P + GNVG +FT+GDL
Sbjct: 15 NPVFLNLVPLLVGNVGPIFTKGDL 38
>UniRef50_UPI0000F1E6A3 Cluster: PREDICTED: similar to Sema4b-prov
protein; n=2; Danio rerio|Rep: PREDICTED: similar to
Sema4b-prov protein - Danio rerio
Length = 836
Score = 31.5 bits (68), Expect = 3.7
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +1
Query: 73 KSNYFVQNHPTVGRIPKM---FHSGCGQCRLATDATDPYFIAWS-QHC 204
K FV +H + ++P FH+ CG+C L A DPY AW+ HC
Sbjct: 490 KGLLFVSSHSGIVQLPVANCSFHNNCGECVL---ARDPY-CAWTGTHC 533
>UniRef50_A6D6W3 Cluster: Putative uncharacterized protein; n=1;
Vibrio shilonii AK1|Rep: Putative uncharacterized
protein - Vibrio shilonii AK1
Length = 336
Score = 31.5 bits (68), Expect = 3.7
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +2
Query: 92 RIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLETNP 265
R + L++ YP F+VG+D VG+ QQ +S + + KN + A ++ L+ P
Sbjct: 276 RWLALIEAYPDRFMVGSDVVGAFGYQQTALSTWHPILSALPKNIADKMAYQNMLDVLP 333
>UniRef50_A6C829 Cluster: Putative uncharacterized protein; n=1;
Planctomyces maris DSM 8797|Rep: Putative
uncharacterized protein - Planctomyces maris DSM 8797
Length = 373
Score = 31.5 bits (68), Expect = 3.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 221 CFCP*AQCCDHAMKYGSVASVASLHCPHPL*NILGI 114
C C QC M++G ++ V +LH P P+ I GI
Sbjct: 285 CLC---QCMPEMMRFGEMSDVVALHAPRPVLLINGI 317
>UniRef50_A3TZF9 Cluster: Acyl-CoA synthase; n=1; Oceanicola
batsensis HTCC2597|Rep: Acyl-CoA synthase - Oceanicola
batsensis HTCC2597
Length = 539
Score = 31.1 bits (67), Expect = 4.9
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Frame = +2
Query: 173 IRISLRGHSIVLMGKNSMMRKAIKDHLETNPALEKLL----PHIK-GNVGFVFTR 322
++I+ R + ++G ++ I+ HLET+PA+ + + PH + G VGF F R
Sbjct: 420 LKITGRIKEMFIVGGSNTYPAEIEAHLETHPAIRQAMVVGVPHERLGQVGFAFIR 474
>UniRef50_A1G909 Cluster: Putative uncharacterized protein; n=6;
Actinomycetales|Rep: Putative uncharacterized protein -
Salinispora arenicola CNS205
Length = 189
Score = 31.1 bits (67), Expect = 4.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 108 NSWMILNEVIGLPGSLVLPTHLGLSE 31
+ W + ++V+G PG LVLP GL++
Sbjct: 137 SGWYVAHDVLGWPGELVLPETTGLND 162
>UniRef50_A0BLJ1 Cluster: Chromosome undetermined scaffold_114,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_114,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 222
Score = 31.1 bits (67), Expect = 4.9
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 83 TSFRIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMR-KAIKDHLET 259
+SF + + + + I G +N + MQQI+I + H +GK + K + ++
Sbjct: 39 SSFHVSRFRQKSARASIFGDENYSKKWMQQIKIEIPMHRNQKLGKLVFDKLKRLIPTVKY 98
Query: 260 NPALEKLLPHIK 295
N AL+ L H K
Sbjct: 99 NSALKSLKDHTK 110
>UniRef50_A7TMY8 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 1968
Score = 30.7 bits (66), Expect = 6.5
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +2
Query: 113 EYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLETNPALEKL 280
E K ++ + + + +++QIR L+ + L GKN +++ + LE + LEKL
Sbjct: 883 EKNKTELINTNELKNNELEQIRELLKVETKKLEGKNQLLQTSKNAELELSEKLEKL 938
>UniRef50_Q0SD08 Cluster: Possible flavodoxin; n=1; Rhodococcus sp.
RHA1|Rep: Possible flavodoxin - Rhodococcus sp. (strain
RHA1)
Length = 267
Score = 30.3 bits (65), Expect = 8.5
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 32 SLNPRWVGRTRLPGSPITSFRIIQLLDEYPKCF-IVGADNVGSQQM 166
+L+PRW+ T LP + + + +L E PK +G D +QM
Sbjct: 214 ALDPRWILSTHLPPADGRTAEFLDMLAEAPKSDPFIGPDQAALEQM 259
>UniRef50_Q19302 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 220
Score = 30.3 bits (65), Expect = 8.5
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 107 LDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLETNPA--LEKL 280
+D+Y FI N+ S + IR + +S GKN+++ A+ A L K
Sbjct: 34 VDQYKNLFIFTIANMRSTRFIAIRQKYKENSRFFFGKNNVISIALGKQKSDEYANQLHKA 93
Query: 281 LPHIKGNVGFVFT 319
+KG G +FT
Sbjct: 94 SAILKGQCGLMFT 106
>UniRef50_Q0CSD9 Cluster: Predicted protein; n=1; Aspergillus
terreus NIH2624|Rep: Predicted protein - Aspergillus
terreus (strain NIH 2624)
Length = 1376
Score = 30.3 bits (65), Expect = 8.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 112 RIPKMFHSGCGQCRLATDATDPYFIAWSQHC 204
R+PK F + CG C + + D YF HC
Sbjct: 246 RVPK-FPASCGICHIGVNTFDEYFECMCAHC 275
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 375,008,212
Number of Sequences: 1657284
Number of extensions: 7230059
Number of successful extensions: 21584
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 21039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21571
length of database: 575,637,011
effective HSP length: 86
effective length of database: 433,110,587
effective search space used: 9961543501
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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