Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_L14
(331 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 85 2e-18
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar... 26 1.7
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 2.2
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 25 3.0
SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase |Schizosacchar... 24 5.2
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 24 5.2
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 24 6.8
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 24 6.8
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac... 24 6.8
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces... 23 9.0
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 23 9.0
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 23 9.0
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 23 9.0
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch... 23 9.0
SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 23 9.0
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 23 9.0
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 85.4 bits (202), Expect = 2e-18
Identities = 38/80 (47%), Positives = 56/80 (70%)
Frame = +2
Query: 92 RIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLETNPAL 271
++ L ++Y F+V DNV SQQM +R LRG + ++MGKN+M+R+A++ + P L
Sbjct: 14 KLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPEL 73
Query: 272 EKLLPHIKGNVGFVFTRGDL 331
E+LLP ++GNVGFVFT DL
Sbjct: 74 ERLLPVVRGNVGFVFTNADL 93
>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
Byr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 1.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 25 PYFTQSKMGREDKATWKSNY 84
PYF Q+ M D A+W SN+
Sbjct: 318 PYFQQALMINVDLASWASNF 337
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 2.2
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -2
Query: 150 TLSAPTMKHFGYSSNSWMILNEVIGLPGSLVLPTHLGLSEVGTSEKFK 7
TLS+P M GYS + W+ + ++ G+ T +S+ S F+
Sbjct: 380 TLSSPVMPINGYSVSLWLNIESLMNDDGNYAPTTLFLISDFLKSTLFR 427
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 25.0 bits (52), Expect = 3.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 277 FFESWICFKMVLDGFPHHAVFAHE 206
FF+S++CF +V+ F HA+ +
Sbjct: 515 FFQSYLCFPVVVIVFIAHALITRQ 538
>SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 390
Score = 24.2 bits (50), Expect = 5.2
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Frame = +3
Query: 231 GKPSRTILK----QIQLSKNCFLTSREMSAL 311
G P+R++L+ ++ +K+ F+TS MSAL
Sbjct: 53 GNPTRSVLQVHLAKLMKAKHAFVTSNGMSAL 83
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 24.2 bits (50), Expect = 5.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 153 PTLSAPTMKHFGYSSNSWMILN 88
P LS+ T H G S NS +LN
Sbjct: 437 PMLSSSTFDHTGVSYNSSRVLN 458
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 23.8 bits (49), Expect = 6.8
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 122 KCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLETNPA 268
K IVGA NVGS + +S IV++ N +KA + ++ N A
Sbjct: 22 KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLNK--KKAEGEAMDLNHA 68
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 23.8 bits (49), Expect = 6.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 200 IVLMGKNSMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDL 331
I L+G N ++ DH++ +P ++ P+I V ++GDL
Sbjct: 401 IPLLGMNKVILAG--DHMQLSPNVQSKRPYISMFERLVKSQGDL 442
>SPAC821.12 |orb6||serine/threonine protein kinase
Orb6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 469
Score = 23.8 bits (49), Expect = 6.8
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 46 MGREDK-ATWKSNYFVQNHPTVG 111
M +DK ATWK N V + TVG
Sbjct: 272 MSSKDKMATWKKNRRVMAYSTVG 294
>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 212 P*AQCCDHAMKYGSVASVASLH 147
P ++ CD A KYG++ + +H
Sbjct: 324 PISEICDLAKKYGAITFLDEVH 345
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 247 VLDGFPHHAVFAHEHN 200
V+DG PH +VF + H+
Sbjct: 1017 VIDGRPHFSVFNYTHH 1032
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 23.4 bits (48), Expect = 9.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 194 HSIVLMGKNSMMRKAIKDHLE 256
HS++ KN+ KA+ HLE
Sbjct: 408 HSLLQKSKNTSSTKALTSHLE 428
>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 23.4 bits (48), Expect = 9.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 243 RTILKQIQLSKNCFLTSREMSALSSPV 323
R ++ QI+ + NC L +EM +S +
Sbjct: 151 RYVVSQIERAGNCSLAKKEMEYTTSAI 177
>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/30 (26%), Positives = 13/30 (43%)
Frame = +1
Query: 7 LKFLRSPYFTQSKMGREDKATWKSNYFVQN 96
L P F Q + +DK WK +++
Sbjct: 103 LNIAMRPIFPQHRYTEQDKKNWKKKVIIED 132
>SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 157
Score = 23.4 bits (48), Expect = 9.0
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 68 PGSPITSFRIIQLLDEYPKCF-IVGADNVGSQQMQQIRISLRGHSIVLMGKNS 223
P SP T+F++ LLD C ++ + N+ + +++ + +V++ K S
Sbjct: 85 PASPETTFKVFSLLDSL--CLRLIQSGNLSTTDTIRLKSLMENCRMVVISKLS 135
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 23.4 bits (48), Expect = 9.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +1
Query: 181 FIAWSQHCAHGQKQ 222
F WSQHC++ K+
Sbjct: 558 FFRWSQHCSNFNKE 571
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,562,976
Number of Sequences: 5004
Number of extensions: 30568
Number of successful extensions: 122
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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