Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_L14
(331 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 93 6e-20
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 92 8e-20
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 92 8e-20
05_01_0524 - 4522488-4523762,4524534-4524644,4524794-4524889 30 0.38
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 28 1.5
04_01_0404 - 5297341-5297970,5298304-5299179 28 1.5
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026... 27 2.7
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 27 3.6
09_04_0719 + 19716536-19716857,19716949-19717101,19717493-197177... 27 3.6
07_03_0662 + 20431448-20432767 27 3.6
08_01_0459 - 4051250-4051405,4052044-4052353,4052454-4052767 27 4.7
06_01_1109 + 9127761-9127976,9128084-9128290,9129539-9129753,913... 27 4.7
04_01_0428 + 5634020-5634232,5634336-5634542,5634911-5635125,563... 27 4.7
01_06_1124 - 34679205-34680926,34681438-34682811 27 4.7
10_08_0718 + 20091001-20091327,20091426-20091806 26 6.2
05_03_0423 + 13792424-13792564,13792712-13792944,13793681-137937... 26 6.2
04_01_0430 + 5651326-5651820,5651886-5652124,5652265-5652507,565... 26 6.2
04_01_0425 + 5609819-5610331,5610450-5610664,5612720-5612959,561... 26 6.2
08_01_0038 - 282431-283954 26 8.3
02_04_0427 - 22809481-22810335 26 8.3
02_04_0351 + 22249117-22249624,22249710-22250674 26 8.3
02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503 26 8.3
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 92.7 bits (220), Expect = 6e-20
Identities = 47/96 (48%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Frame = +2
Query: 50 VGRTRLPGSPITSFRIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMM 229
+ RT+ ++ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKN+++
Sbjct: 3 IKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLI 62
Query: 230 RKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDL 331
R+ IK H + N +L+P + GNVG +FT+GDL
Sbjct: 63 RRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDL 98
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 92.3 bits (219), Expect = 8e-20
Identities = 47/96 (48%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Frame = +2
Query: 50 VGRTRLPGSPITSFRIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMM 229
+ RT+ ++ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKN+++
Sbjct: 3 IKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLI 62
Query: 230 RKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDL 331
R+ IK H + N +L+P + GNVG +FT+GDL
Sbjct: 63 RRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDL 98
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 92.3 bits (219), Expect = 8e-20
Identities = 47/96 (48%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Frame = +2
Query: 50 VGRTRLPGSPITSFRIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMM 229
+ RT+ ++ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKN+++
Sbjct: 3 IKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLI 62
Query: 230 RKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDL 331
R+ IK H + N +L+P + GNVG +FT+GDL
Sbjct: 63 RRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDL 98
>05_01_0524 - 4522488-4523762,4524534-4524644,4524794-4524889
Length = 493
Score = 30.3 bits (65), Expect = 0.38
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Frame = +2
Query: 5 SLNFSEVPTSLNPRWVGRTRLPGSPITSFRIIQLLDEYPKCFIVGADNVGSQQMQQIRIS 184
S + EVP S+NP + + G+ TS I DEY KC V N G M
Sbjct: 162 SCHIKEVPVSINPEFGEAEAVSGALETSTDI----DEYMKCSAVSDLNSGDSTMDHTEQD 217
Query: 185 LRGHS--IVLMGKNSMMRKAIKDHLETNPALEKLL 283
R S ++ + + K+ +H T + K+L
Sbjct: 218 ERDSSPGFDVLVDDCLSNKSDLEHQLTTESDNKVL 252
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 214 QKQHDEESH-QGPS*NKSSSRKTASSHQGKC 303
Q+Q +E + G S N +SS KTA S Q KC
Sbjct: 742 QEQPEENAEASGESGNTNSSHKTAHSSQNKC 772
>04_01_0404 - 5297341-5297970,5298304-5299179
Length = 501
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 206 LMGKNSMMRKAIKDHLETNPALEKLLPHI 292
L+ S M+ IK+ L NP L LLPH+
Sbjct: 342 LLENLSYMKLVIKETLRLNPVLPLLLPHL 370
>04_04_1392 +
33201015-33201600,33202030-33202406,33202528-33202638,
33202720-33202815,33202899-33203570
Length = 613
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +2
Query: 131 IVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLETNPALEKLL 283
++G +NV M RI+ R H+++ +G + +K+ + PA+E+ +
Sbjct: 559 VLGEENVNVSFMSVGRIAPRKHAVMAIGVDEEPKKSTLTKIGEIPAIEEFV 609
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +2
Query: 116 YPKCFI--VGADNVGSQQMQQIRISL 187
Y KC I VG DN+ Q MQQ R SL
Sbjct: 1292 YTKCLIISVGRDNIPWQWMQQNRTSL 1317
>09_04_0719 +
19716536-19716857,19716949-19717101,19717493-19717707,
19717785-19717855,19717998-19718157,19718598-19718790,
19718936-19719091,19719229-19719317,19719602-19719695,
19719870-19720039
Length = 540
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 71 GSPITSFRIIQLLDEYPKCFIVGADNVGSQQ-MQQIRISLRGHSIVLMGKNSMMRKAIKD 247
GS + R +++ ++ P +V ++ G+ Q +Q + L G +++ + R ++
Sbjct: 233 GSYSSEGRYMEIYND-PAMSLVRSETTGTVQGVQTSKHILYGRKAIVIASGAWTRTLLRS 291
Query: 248 HLETNPALEKLLPHIKGNV 304
LE NP L+ + KG++
Sbjct: 292 FLEPNPTLDIPVMPRKGHL 310
>07_03_0662 + 20431448-20432767
Length = 439
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 179 YGSVASVASLHCPHPL 132
YG +AS SL CP PL
Sbjct: 417 YGGLASAGSLQCPRPL 432
>08_01_0459 - 4051250-4051405,4052044-4052353,4052454-4052767
Length = 259
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +1
Query: 25 PYFTQSKMGREDKATWKSNYFVQNHPTVGRIPKMFHSG 138
P F GR ATW S V HP VG + HSG
Sbjct: 118 PEFVVETDGRRCLATWCSQEQVLRHPAVGCF--LTHSG 153
>06_01_1109 +
9127761-9127976,9128084-9128290,9129539-9129753,
9131665-9131904,9133372-9133570,9134666-9134992,
9135977-9136070,9136307-9136320
Length = 503
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 155 SLHCPHPL*NILGIRPTVG 99
S+ CP L +++GI+PTVG
Sbjct: 177 SILCPSSLNSVVGIKPTVG 195
>04_01_0428 +
5634020-5634232,5634336-5634542,5634911-5635125,
5637880-5638119,5639112-5639310,5639954-5640319
Length = 479
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 155 SLHCPHPL*NILGIRPTVG 99
S+ CP L +++GI+PTVG
Sbjct: 176 SILCPSSLNSVVGIKPTVG 194
>01_06_1124 - 34679205-34680926,34681438-34682811
Length = 1031
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 35 LNPRWVGRTRLPGSPITSFRIIQLLDEY 118
L+PR++GRT P I + R++ LL E+
Sbjct: 4 LSPRFLGRTSPPVDAIAARRLVALLLEH 31
>10_08_0718 + 20091001-20091327,20091426-20091806
Length = 235
Score = 26.2 bits (55), Expect = 6.2
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +1
Query: 73 KSNYFVQNHPTVGRIPKMFHSGCGQC 150
KS ++++P + ++P +FH+G C
Sbjct: 43 KSELLLKSNPAIKKVPVLFHNGKPLC 68
>05_03_0423 +
13792424-13792564,13792712-13792944,13793681-13793756,
13794003-13794089,13794500-13794553,13794654-13794695,
13794818-13794896,13795059-13795129,13795235-13795297
Length = 281
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 123 FGYSSNSWMILNEVIGLPGSLVLPTHLGLSEV 28
F YS N + L VIG+ GSL +LG S V
Sbjct: 157 FQYSKNQYANLLLVIGIAGSLSQVPYLGASFV 188
>04_01_0430 +
5651326-5651820,5651886-5652124,5652265-5652507,
5653159-5653360,5653679-5654035
Length = 511
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 155 SLHCPHPL*NILGIRPTVG 99
S+ CP L +++GI+PTVG
Sbjct: 209 SILCPASLNSVVGIKPTVG 227
>04_01_0425 +
5609819-5610331,5610450-5610664,5612720-5612959,
5613122-5613232,5613789-5613987,5614097-5614453
Length = 544
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 164 SVASLHCPHPL*NILGIRPTVG 99
+ AS+ CP +++GI+PTVG
Sbjct: 204 TTASILCPAAANSVVGIKPTVG 225
>08_01_0038 - 282431-283954
Length = 507
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +2
Query: 113 EYPKCFIVGADNVGSQQMQQIR-ISLRGHSIVL---MGKNSMMRKAIKDHLETNPALEKL 280
EY ++ + ++ ++R + +G IV +G+ ++ IK+ L +PA L
Sbjct: 318 EYAMAELIQKPQLMAKLQAEVRGVVPKGQEIVTEEQLGRMPYLKAVIKETLRLHPAAPLL 377
Query: 281 LPHI 292
+PH+
Sbjct: 378 VPHV 381
>02_04_0427 - 22809481-22810335
Length = 284
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 265 WICFKMVLDGFPHHAVFAHEHNAVTTQ*N 179
W F+ + FP VF HE +T Q N
Sbjct: 123 WRSFEASIANFPSPGVFGHEPIVITNQRN 151
>02_04_0351 + 22249117-22249624,22249710-22250674
Length = 490
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 31 FTQSKMGREDKATWKSNYFVQNHPTVGRIPKMFHSG 138
FT++ GR A+W V HP VG + HSG
Sbjct: 352 FTEATKGRGLVASWCDQEAVLRHPAVGLF--LTHSG 385
>02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503
Length = 258
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -1
Query: 292 DVRKQFFESWICFKMVLDGFPHHAVFAHEHNAVTTQ*NT 176
D Q+FE+W C ++ GF F HN Q T
Sbjct: 179 DSEVQYFENWSCARL---GFSSSGCFNQHHNLDDVQAET 214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,292,667
Number of Sequences: 37544
Number of extensions: 207135
Number of successful extensions: 600
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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