Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L13
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    56   6e-09
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    26   5.9  
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    26   5.9  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.8  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   7.8  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 55.6 bits (128), Expect = 6e-09
 Identities = 23/64 (35%), Positives = 35/64 (54%)
 Frame = +3

Query: 270 IDNPDYKGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGT 449
           I NP+Y+G W+P  I NP + G W   +I NP+Y  D +      +  VG +LW ++   
Sbjct: 340 IRNPNYRGPWSPPMIPNPEFIGEWYPRKIPNPDYFDDDHPSHFGPLYGVGFELWTMQPNI 399

Query: 450 IFNN 461
            F+N
Sbjct: 400 RFSN 403



 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 44/137 (32%), Positives = 51/137 (37%), Gaps = 14/137 (10%)
 Frame = +3

Query: 3   KPDNTYEVLIDNEKVESGELEADW--DFLPPKKIKDPEAKKPEDWXX--XXXXXXXXXXX 170
           KPD T+EV I+ + V  G L  D+    LPP +I DPE  KP DW               
Sbjct: 209 KPDQTFEVRINGDVVRQGSLFYDFIPPVLPPVEIYDPEDIKPADWVDEPEIPDPNAVKPD 268

Query: 171 XXXXXXXXHIPDPDASKXXXXXXXXXXXXXXXXIDNP-----DYKGVWAPKQIDNP---- 323
                    IPDPDA K                   P     +  G W P +I NP    
Sbjct: 269 DWDEDAPRMIPDPDAVKPEDWLEDEPLYIPDPEAQKPEDWDDEEDGDWIPSEIINPKCIE 328

Query: 324 -AYKGPWIHPEIDNPEY 371
            A  G W  P I NP Y
Sbjct: 329 GAGCGEWKPPMIRNPNY 345


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 48  ESGELEADWDFLPPKKIKDPEAKKPEDW 131
           E   L+     LP  + K P AKKPED+
Sbjct: 157 EKNTLDLKHCLLPSPEYKAPPAKKPEDY 184


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 103 IQKQRNLKIGTTNPQSPIRKTRNPRTGTNLSTFRTLMPVSL 225
           IQ   NL+    N  + +    +P++ T LSTFR   P+SL
Sbjct: 237 IQNSNNLE----NTGAFVENANSPQSNTPLSTFRHSSPLSL 273


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 69  DWDFLPPKKIKDPEAKKPEDW 131
           DWD +P ++ K  EA KP DW
Sbjct: 209 DWDDVPWRE-KPLEAMKPRDW 228


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 25/97 (25%), Positives = 39/97 (40%)
 Frame = +1

Query: 181 GTNLSTFRTLMPVSLKIGMMRWMESGNHL*STTPTTRASGHLNRLTTLHTRDHGSTRRLT 360
           GTN + F  ++  S       W+   N    T  T   S   + LT L T    S++ LT
Sbjct: 215 GTNGTNFTCIVNASNATNSTFWLNGTNSTNGTNSTNSTSTTSHSLTKLPT----SSKSLT 270

Query: 361 ILNTLQTRTCTSVMRYALSVSTYGRSSLEPSLITSFS 471
              T  +   T  +  ALS +    ++ + +  TS S
Sbjct: 271 TSKTTASGHITKGVMEALSTNDTTNTTDDATNTTSDS 307


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 73  GTSYLRRRSRIQKQRNLKIGTTNPQS 150
           GTS  RRR R++K+  +KI   + +S
Sbjct: 340 GTSQFRRRERVKKRHVIKIHEASNKS 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,764
Number of Sequences: 5004
Number of extensions: 46327
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)