Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_L13
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 162 3e-40
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 146 1e-35
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 143 1e-34
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 139 2e-33
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 70 2e-12
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 51 1e-06
08_02_1590 + 28074137-28074247,28074791-28074886,28074976-280750... 36 0.040
04_04_1603 - 34716753-34717097,34717512-34717659,34717747-347179... 30 2.0
12_02_0944 - 24666114-24666200,24666287-24666352,24666450-246665... 29 3.5
06_02_0225 + 13257655-13260693 29 3.5
07_01_0117 + 894314-896677 28 6.1
08_02_0972 - 23187294-23188034 28 8.0
01_05_0428 + 22060431-22060850 28 8.0
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 162 bits (393), Expect = 3e-40
Identities = 78/168 (46%), Positives = 95/168 (56%), Gaps = 1/168 (0%)
Frame = +3
Query: 6 PDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXX 185
PD TY +LIDN + +SG + WD LPPK+IKDPEAKKPEDW
Sbjct: 188 PDATYTILIDNVEKQSGSIYEHWDILPPKQIKDPEAKKPEDWDDKEYIPDPEDKKPEGYD 247
Query: 186 XX-XHIPDPDASKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWIHPEIDN 362
IPDPDA K I NP+YKG W K+I NP Y+G W P IDN
Sbjct: 248 DIPKEIPDPDAKKPEDWDDEEDGEWTAPTIPNPEYKGPWKQKKIKNPNYQGKWKAPMIDN 307
Query: 363 PEYTPDSNLYKRDEICSVGLDLWQVKSGTIFNNFLFTDDPALAKEKGE 506
P++ D +Y D + +G++LWQVKSGT+F+NFL TDDP LAK E
Sbjct: 308 PDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNFLITDDPELAKTFAE 355
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 146 bits (354), Expect = 1e-35
Identities = 69/169 (40%), Positives = 92/169 (54%), Gaps = 1/169 (0%)
Frame = +3
Query: 3 KPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXX 182
+PD Y +LIDN + ++G + DW+ +PPK +DPEAKKPEDW
Sbjct: 194 RPDAKYSILIDNTEKQTGSIYDDWNIIPPKNKRDPEAKKPEDWDDNEYIPDPEDKKPEGY 253
Query: 183 XXX-XHIPDPDASKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWIHPEID 359
I DP+A+K I NP+YKG W K++ NP YKG W P I
Sbjct: 254 DDIPKEITDPEATKPEDWDDEEDGEWTAPTIPNPEYKGPWNQKKLKNPNYKGKWKAPLIP 313
Query: 360 NPEYTPDSNLYKRDEICSVGLDLWQVKSGTIFNNFLFTDDPALAKEKGE 506
NP+Y D +Y D + +G++LWQVKSGT+F+N L TDDP AK+ E
Sbjct: 314 NPDYKDDPYIYAFDSLNHIGIELWQVKSGTLFDNILITDDPEYAKKFAE 362
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 143 bits (346), Expect = 1e-34
Identities = 68/169 (40%), Positives = 90/169 (53%), Gaps = 1/169 (0%)
Frame = +3
Query: 3 KPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXX 182
+PD +Y +L+DN + ESG + DWD LPP+KIKD AKKP+DW
Sbjct: 185 RPDASYSILVDNRERESGSMYTDWDILPPRKIKDVHAKKPKDWDDREYIEDPDAVKPEGY 244
Query: 183 XXX-XHIPDPDASKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWIHPEID 359
IPDP K I NP YKG W K+I NP YKG W P ID
Sbjct: 245 DSIPKEIPDPKDKKPDTWDDDDDGIWKPRMIPNPAYKGPWKRKKIKNPNYKGKWKIPWID 304
Query: 360 NPEYTPDSNLYKRDEICSVGLDLWQVKSGTIFNNFLFTDDPALAKEKGE 506
NPE+ D +LY + +G+++WQVK+G++F+N L DDP A++ E
Sbjct: 305 NPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVFDNILICDDPEYARKAAE 353
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 139 bits (337), Expect = 2e-33
Identities = 70/181 (38%), Positives = 95/181 (52%), Gaps = 2/181 (1%)
Frame = +3
Query: 3 KPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXX 182
+PD +Y +L+DN + E G + DWD LPP+KIK+ AKKP+DW
Sbjct: 185 RPDASYSLLVDNREREFGSMYTDWDILPPRKIKESNAKKPKDWDDREYIEDPDEVKPEGY 244
Query: 183 XXX-XHIPDPDASKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWIHPEID 359
IPDP K I NP+YKG W K+I NP YKG W P ID
Sbjct: 245 DSIPKEIPDPKDKKPESWDDDDDGVWKPRMIPNPEYKGRWKRKKIKNPNYKGKWKIPWID 304
Query: 360 NPEYTPDSNLYKRDEICSVGLDLWQVKSGTIFNNFLFTDDPALAKE-KGEIIKKMQEGEK 536
NPE+ D +LY + VG+++WQVK+G++F+N L DDP A+ E+ +E EK
Sbjct: 305 NPEFEDDPDLYVLKPLQYVGIEVWQVKAGSVFDNILICDDPEYARSVVDEVRAANKEAEK 364
Query: 537 K 539
+
Sbjct: 365 E 365
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/72 (43%), Positives = 43/72 (59%)
Frame = +3
Query: 276 NPDYKGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGTIF 455
NP YKG W IDNP YKG W EI NPEY + + D I ++G+++W ++ G +F
Sbjct: 319 NPAYKGKWHAPLIDNPNYKGIWKPQEIPNPEYF-ELDKPDSDPIAAIGIEIWTMQDGILF 377
Query: 456 NNFLFTDDPALA 491
+N L DD +A
Sbjct: 378 DNILIADDEKVA 389
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +3
Query: 3 KPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPEAKK 119
+PD Y +LIDN + +G + D D LPPKK KDPEAKK
Sbjct: 540 RPDAKYSILIDNTEKRTGSIYGDCDNLPPKKKKDPEAKK 578
>08_02_1590 +
28074137-28074247,28074791-28074886,28074976-28075023,
28075278-28075430
Length = 135
Score = 35.5 bits (78), Expect = 0.040
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +3
Query: 432 QVKSGTIFNNFLFTDDPALAKEKGE 506
+VKSGT+F+N L TDDP AK+ E
Sbjct: 37 RVKSGTLFDNILITDDPEYAKKFAE 61
>04_04_1603 -
34716753-34717097,34717512-34717659,34717747-34717984,
34718075-34718285,34718398-34718513,34718698-34718793,
34719279-34719306
Length = 393
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 363 PEYTPDSNLYKRDEICSVGLDLWQVKSGTIFNNFLFTDDPALAKEKGEI--IKKMQE 527
PEY L KR +I S G+ + ++ SG + L DD L ++ E+ + K++E
Sbjct: 235 PEYAWHGQLTKRADIYSFGVLVLEIVSGKSSSRSLLADDKILLEKAWELHEVGKLKE 291
>12_02_0944 -
24666114-24666200,24666287-24666352,24666450-24666515,
24666607-24666825,24666927-24667403
Length = 304
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +1
Query: 109 KQRNLKIGTTNPQSPIRKTRNPRTGTNLSTFRTLMPVSLKIGMMRWMESGNH 264
K R + T+PQS + R R L T + L+P K+ + +E H
Sbjct: 215 KSRAGRGAATDPQSLYARKRRERINERLKTLQNLVPNGTKVDISTMLEEAVH 266
>06_02_0225 + 13257655-13260693
Length = 1012
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = -3
Query: 278 VVDHRWFPLSIHLIIPIFRLTGIRVRNVLRFVPVLGFLVFRI 153
+V+ W PLS + IP L+ R+ ++RFV + FLV+R+
Sbjct: 132 LVEKPWKPLSRKVPIPPGILSPYRLLVLVRFVALFLFLVWRV 173
>07_01_0117 + 894314-896677
Length = 787
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 176 LGFLVFRIGDCGFVVPIFRFLCFWILDLLR 87
LGF+ F+IG C + P+F F+ + + ++R
Sbjct: 459 LGFVSFKIGQCCY-KPVFHFMLYCVRCMMR 487
>08_02_0972 - 23187294-23188034
Length = 246
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 100 RIQKQRNLKIGTTNPQSPIRKTRNPRTGTNLSTFRTLMPVSLKIGMMRWMESGNH 264
R K+RN++I +T+PQS + R R + + L+P K+ ++ H
Sbjct: 148 RPPKRRNVRI-STDPQSVAARMRRERISERIRILQRLVPGGTKMDTASMLDEAIH 201
>01_05_0428 + 22060431-22060850
Length = 139
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Frame = -2
Query: 246 PSHHPNLQAYWHQG-PECAQVCP 181
P HHP A HQG P C CP
Sbjct: 6 PPHHPPCAACAHQGRPSCPAGCP 28
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,794,495
Number of Sequences: 37544
Number of extensions: 325053
Number of successful extensions: 1028
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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