Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_L12
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0727 - 35766252-35766481,35766592-35766721,35767049-357671... 30 1.3
04_04_1269 + 32272290-32272321,32272924-32274143,32274390-322744... 29 3.1
01_01_0363 + 2850954-2853675,2853819-2854225 29 3.1
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434 28 7.1
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 28 7.1
03_02_0495 - 8879612-8880283,8880369-8880608,8880713-8880775,888... 28 7.1
12_01_0761 + 6913969-6914346 27 9.4
10_01_0162 + 1820761-1821855 27 9.4
>03_06_0727 -
35766252-35766481,35766592-35766721,35767049-35767116,
35767179-35767217,35767677-35767761,35768097-35768197,
35768292-35768511
Length = 290
Score = 30.3 bits (65), Expect = 1.3
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Frame = +2
Query: 59 EADPCVCTFIYAPVCGTDGNTYPNKCSLECS-RPLAPSL-------EMKHRGECQEVKVA 214
+ D V +Y P GT P K S+E +P+ + EM + Q + +
Sbjct: 35 QGDTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLL 94
Query: 215 DIQPCICTREIKQVCGSDG-VTYGNPCLLNCATQSNPSLSIEH 340
+ P T I QV G+DG V++ LL+ S L EH
Sbjct: 95 TVHPNTTTSVILQVVGNDGSVSFCRNVLLSIV--SGCLLDYEH 135
>04_04_1269 +
32272290-32272321,32272924-32274143,32274390-32274433,
32274883-32275093,32275176-32275413,32275498-32275585,
32275865-32276020,32276370-32276444
Length = 687
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 425 PSCACTRNLEPVCASNGVTYNNECMMRCHGGDHLTVVT 538
PSC C EPV +++ + +RC G DH +++
Sbjct: 302 PSCQCLDGFEPVGSNSSSGCRRKQQLRC-GDDHFVIMS 338
>01_01_0363 + 2850954-2853675,2853819-2854225
Length = 1042
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 225 GCISATLTSWHSPRCFISRDGANGREHSSEHLLG*VFPS 109
G S TLTSW+S F + +G H ++G PS
Sbjct: 31 GLSSRTLTSWNSSTSFCNWEGVKCSRHRPTRVVGLSLPS 69
>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
Length = 418
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = -2
Query: 388 FRLVFHNLHSVVARTRVFDAQARVRLCGAIQQARVAVSDAVATANLFDLPRADTWLYIGN 209
F ++ H +H +V A R A+Q +RVAV AV F + ++G+
Sbjct: 306 FPVMMHPIHEIVEARLFPSAGGWARKRAAVQASRVAVVGAVTAVACFVPAFGEFAAFVGS 365
Query: 208 --FNFLAFA--AMFHL 173
L+F A+FHL
Sbjct: 366 TVCALLSFVLPALFHL 381
>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 431 CACTRNL-EPVCASNGVTYNNECMMRC 508
C C + L P+C G T+ EC++ C
Sbjct: 1186 CLCLKPLIHPLCCPKGHTFCKECILEC 1212
>03_02_0495 -
8879612-8880283,8880369-8880608,8880713-8880775,
8881510-8881620
Length = 361
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 243 SRVQIHGCISATLTSWHS 190
+RV+ H CIS+++ WHS
Sbjct: 296 ARVKKHACISSSIIGWHS 313
>12_01_0761 + 6913969-6914346
Length = 125
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 575 KSFGSSTHCKVRALRPSSGH 516
KS +H ++R LRPSSGH
Sbjct: 27 KSMSRLSHGQIRRLRPSSGH 46
>10_01_0162 + 1820761-1821855
Length = 364
Score = 27.5 bits (58), Expect = 9.4
Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 1/115 (0%)
Frame = +2
Query: 152 RPLAPSLEMKHRGECQEVKVADIQPCICTREIKQVCGSDGVTYGNPCL-LNCATQSNPSL 328
R AP L +HR + A + +C + V V + NP L P+
Sbjct: 69 RYTAPQLLHRHRQDAAAAAAATVALRVCAHGRRHVVFYVCVRFANPWLDTYWICLDAPAA 128
Query: 329 SIEHPGPCDNRVKVVENQPESNKVIVVDNNNAPSCACTRNLEPVCASNGVTYNNE 493
+ G D+ + + + ++ + + A C R L +CA NGV E
Sbjct: 129 AALLAGGLDDTARALARRERGARLAALWSALADR-LCRRVLVDLCAKNGVPVEPE 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,720,150
Number of Sequences: 37544
Number of extensions: 402862
Number of successful extensions: 1150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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