Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L10
         (710 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC017020-1|AAH17020.1|  361|Homo sapiens single-stranded DNA bin...    30   7.1  
AY026275-1|AAK15803.1|  361|Homo sapiens single stranded DNA bin...    30   7.1  
AK126437-1|BAC86549.1|  229|Homo sapiens protein ( Homo sapiens ...    30   9.4  
AK074537-1|BAC11046.1|  361|Homo sapiens protein ( Homo sapiens ...    30   9.4  

>BC017020-1|AAH17020.1|  361|Homo sapiens single-stranded DNA
           binding protein 2 protein.
          Length = 361

 Score = 30.3 bits (65), Expect = 7.1
 Identities = 23/85 (27%), Positives = 32/85 (37%)
 Frame = +2

Query: 329 NMPTISHLPSTNTVGGGLEYMFKDKIGASASAAHTDFFNKNDYNLGGKLNLFKTPSTSLD 508
           N P     P ++   GGL  M    +  S  +   D  +KN  N    ++L   P T  D
Sbjct: 280 NRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPN---NMSLSNQPGTPRD 336

Query: 509 FTAGWHKFDTPFMKSSWEPSTWFSL 583
                  F  PF   S+ PS   S+
Sbjct: 337 DGEMGGNFLNPFQSESYSPSMTMSV 361


>AY026275-1|AAK15803.1|  361|Homo sapiens single stranded DNA
           binding protein-2 protein.
          Length = 361

 Score = 30.3 bits (65), Expect = 7.1
 Identities = 23/85 (27%), Positives = 32/85 (37%)
 Frame = +2

Query: 329 NMPTISHLPSTNTVGGGLEYMFKDKIGASASAAHTDFFNKNDYNLGGKLNLFKTPSTSLD 508
           N P     P ++   GGL  M    +  S  +   D  +KN  N    ++L   P T  D
Sbjct: 280 NRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPN---NMSLSNQPGTPRD 336

Query: 509 FTAGWHKFDTPFMKSSWEPSTWFSL 583
                  F  PF   S+ PS   S+
Sbjct: 337 DGEMGGNFLNPFQSESYSPSMTMSV 361


>AK126437-1|BAC86549.1|  229|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44473 fis, clone UTERU2030213. ).
          Length = 229

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 306 PRRRSRPEICPPFPIYHQP-TLLVVVSNICSRTRSVHQRAPL 428
           PR +SRP  C P  + H+P T     S  C +   VH++ P+
Sbjct: 160 PRPKSRPASCCPHSLRHRPLTSSPRSSQSCCQLFGVHRQRPI 201


>AK074537-1|BAC11046.1|  361|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90056 fis, clone HEMBA1003072, weakly similar to
           Gallus gallus single-strand DNA-binding protein csdp
           mRNA. ).
          Length = 361

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 23/85 (27%), Positives = 32/85 (37%)
 Frame = +2

Query: 329 NMPTISHLPSTNTVGGGLEYMFKDKIGASASAAHTDFFNKNDYNLGGKLNLFKTPSTSLD 508
           N P     P ++   GGL  M    +  S  +   D  +KN  N    ++L   P T  D
Sbjct: 280 NRPNFPMGPGSDGPMGGLGGMESHHMDGSLGSGDMDSISKNSPN---NMSLSNQPGTPRD 336

Query: 509 FTAGWHKFDTPFMKSSWEPSTWFSL 583
                  F  PF   S+ PS   S+
Sbjct: 337 DGEMGGNFLNPFQSESYSPSMTMSV 361


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,892,124
Number of Sequences: 237096
Number of extensions: 2370264
Number of successful extensions: 4155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4155
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)