Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L10
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z82277-1|CAB05248.1|  648|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U12921-1|AAB60256.1|  648|Caenorhabditis elegans sex determinati...    28   7.6  

>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 128  LGSVDLTNQIKLGAATAGLVYDNVNRHGATLTNTHIPGIGD 250
            +G VDL+    LG A    + DNV+ HG  L +   P +GD
Sbjct: 1832 IGKVDLSQNSSLGMAK---LLDNVSVHGILLDSIMDPTVGD 1869


>U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical
           protein F38B6.6 protein.
          Length = 690

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +2

Query: 98  TGNENHKLSALGSVDLTNQIKLGAATAGLVYDNVNRHGATLTNTHIPGIGDKLSVAGKVN 277
           T  ENH  SA   +DL     L  A  G++Y  ++RH    +   I    D  ++  K N
Sbjct: 619 TAAENHIKSA---IDLNPTSVLFHANLGILYQRMSRHKEAESQYRIVLALDSKNIVAKQN 675

Query: 278 LFHNNDHD 301
           L    +H+
Sbjct: 676 LQKLEEHN 683


>Z82277-1|CAB05248.1|  648|Caenorhabditis elegans Hypothetical
           protein LLC1.1 protein.
          Length = 648

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +2

Query: 362 NTVGGGLEYMFKDKIGASASAAHTDFFNKNDYNLGGKLNLFKTPSTSLD 508
           N VGG L    +D  G  A   H   F K+D N   +L LF    T+ D
Sbjct: 176 NLVGGHLSDALQDVSGGVAETLHVRKFLKDDPN-DTELKLFNDLKTAFD 223


>U12921-1|AAB60256.1|  648|Caenorhabditis elegans sex determination
           protein.
          Length = 648

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +2

Query: 362 NTVGGGLEYMFKDKIGASASAAHTDFFNKNDYNLGGKLNLFKTPSTSLD 508
           N VGG L    +D  G  A   H   F K+D N   +L LF    T+ D
Sbjct: 176 NLVGGHLSDALQDVSGGVAETLHVRKFLKDDPN-DTELKLFNDLKTAFD 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,512,906
Number of Sequences: 27780
Number of extensions: 346343
Number of successful extensions: 809
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)