Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L10
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.6  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 422 AAHTDFFNKNDYNLGGKLNLF 484
           A ++ ++  +DYNL  KLN F
Sbjct: 203 ANYSGWYLNHDYNLENKLNYF 223


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 81  IAPEVPSELIVSSPACRRSLELVHCSG 1
           +A  V S  IVSSP   R   +  C+G
Sbjct: 381 VAAAVQSSSIVSSPDSARHQRIGGCNG 407


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 588  LDNENQVLGSQEDFMKGVSNLC 523
            LD E  +L + ED+   V  LC
Sbjct: 1577 LDGERVMLKASEDYRYSVRGLC 1598



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 265 SNRQFISNSRNMSVCE 218
           SN QF++ +  +S CE
Sbjct: 559 SNEQFLNTAATLSFCE 574


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,338
Number of Sequences: 438
Number of extensions: 4502
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)