Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L08
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    47   3e-06
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   1.8  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   3.1  
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    25   7.3  
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    25   7.3  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    25   7.3  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    25   9.6  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    25   9.6  

>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 9/136 (6%)
 Frame = +1

Query: 271 KVLQISDTHFDPYYAEGANAD--CNEPLCCRASSGPLRTPDSGAGRWGDYRKCDTPKRTI 444
           + L I+D H D YY +G+  D  C+      +   PL     G    G   +CD+    I
Sbjct: 48  RFLHITDMHPDIYYEKGSTVDHYCHS-YDHNSDDTPLGKSKVGYLSPGPGYECDSSPALI 106

Query: 445 DHMLKHIADTHTD----IDYILWTGDLPPHDVWN---QTKEEHLQVFKKRLLKCLICFRE 603
           D  L+ + +   D    ID+ILWTGD   HD  N   +T+ E L   +  + K +  F +
Sbjct: 107 DKTLEWLKEHQDDVLGGIDFILWTGDNSRHDNDNHFPRTQSEILASNEDLVNKMIEAFPD 166

Query: 604 YQFSQLSGNHESSPVN 651
                  GN++  P N
Sbjct: 167 VPIVSAIGNNDIYPHN 182


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +1

Query: 181  PYHEWEVAFPPVPKP--AVRPLDAPIDKAPTFK 273
            P  +  VA PPVPKP  AV P+ AP    P  K
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPK 1125


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 18/64 (28%), Positives = 22/64 (34%)
 Frame = +1

Query: 49  SARVCEGITRLFGSEVVYVLKRITIGPDEICSFVIGDACGDVYNPYHEWEVAFPPVPKPA 228
           +A  C     L  S VV    + T+      S V     G VY PY      FP     A
Sbjct: 73  NAASCIPSASLLSSSVVLYSAKETVTVSSYWSLVSTSVTGTVYVPYTSSVACFPYATSDA 132

Query: 229 VRPL 240
             P+
Sbjct: 133 PNPI 136



 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -1

Query: 260 ALSIGASKGRTAGFGTGGNATSHS*YGLYTSPQASPIT 147
           A +I +S   T+  GTG   TS S    Y +P ASP T
Sbjct: 158 ATTITSSSPSTSIIGTGSTDTSVSSTLTYHTPIASPTT 195


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -2

Query: 532 SIHRVVANLPSTKCSLYQYEYQQCALACGR*YVLVCHIFYSHPTGLHHCLVF 377
           S+  +V N  S   ++ Q+E +Q  LAC    +LV  I Y+   G+ H +V+
Sbjct: 65  SMLHIVFNFVSLLPAMSQFEKKQGTLAC----ILVTVIPYTLFPGIMHLIVY 112


>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +1

Query: 283 ISDTHFDPYYAEGANADCNEPLCCRASSGPLRTPDSGAGRW 405
           +S   F PY A G   D    L  R    PL + + G G W
Sbjct: 193 LSRAPFGPYIATGEYGDFMHTLDTRNIGKPLFSANLGGGVW 233


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 469 DTHTDIDYILWTGDL 513
           D H D +YILWT ++
Sbjct: 108 DLHPDYEYILWTDEM 122


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 457 KHIADTHTDIDYILWTGD 510
           K   D H D +Y+LWT +
Sbjct: 79  KSCIDLHPDYEYVLWTDE 96


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 541 KEEHLQVFKKRLLKCLICFREYQFSQLSGNHESSPVNS 654
           K+EH+ +  K+L K L   +E+   QL  +   SP  S
Sbjct: 487 KKEHISLIMKKLTKTLDLMKEF---QLQSSFSDSPTAS 521


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,148
Number of Sequences: 5004
Number of extensions: 66668
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)