Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L08
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0125 - 944207-945778                                             29   4.3  
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968...    28   5.7  
02_05_0355 + 28249774-28249980,28250068-28250131,28250230-282502...    28   5.7  
02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482...    28   5.7  
01_05_0741 - 24821208-24821220,24821476-24821711,24822276-248225...    28   5.7  
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626...    28   7.5  
08_01_1059 - 10775143-10776063                                         28   7.5  

>07_01_0125 - 944207-945778
          Length = 523

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 430 PKRTIDHMLKHIADTHTDIDYILWTGDLPPHDVWNQTKEEH 552
           PK  I  +L    + H   D +LW   LPP+  +  + E H
Sbjct: 465 PKIGIQDILSGRVEPHGKFDLVLWRSHLPPYYSYIYSSEIH 505


>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
            14397510-14397609
          Length = 2033

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 502  TGDLPPHDVWNQTKEEHLQVFKKRLLKCLICFREYQFSQLSGNHESSPVNS 654
            T  + PH+ W+    E L    +RL    +  +E +    S ++  SP+NS
Sbjct: 1849 TSSVEPHEQWSNNVLEKLSSDAQRLQSIQVSIKELKRKMGSPSNGKSPMNS 1899


>02_05_0355 +
           28249774-28249980,28250068-28250131,28250230-28250273,
           28250377-28250624,28250712-28250883
          Length = 244

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 398 PAPLSGVRNGPLEALQQSGSLQSAFAPSA*YGSKCV 291
           PAP  G R+G   A++ SGS+   F     +  KC+
Sbjct: 73  PAPKPGDRDGQAVAIRVSGSIDFIFGNGRSFYEKCI 108


>02_05_0077 +
           25645730-25645993,25647172-25647648,25648027-25648237,
           25648407-25648564,25648641-25648711,25648829-25648934,
           25649008-25649094,25649701-25650252,25650337-25650403,
           25650971-25651104,25651175-25651228,25651376-25651472,
           25652007-25652212,25652287-25652367,25652543-25652608,
           25653025-25653098,25653766-25653871
          Length = 936

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 298 FDPYYAEGANADCNEPLCCRA 360
           F PYYA  A A+C+ P+ C A
Sbjct: 361 FTPYYAPQAEANCSIPVLCVA 381


>01_05_0741 -
           24821208-24821220,24821476-24821711,24822276-24822560,
           24822790-24822850,24823399-24823463,24823571-24823959,
           24824059-24824188
          Length = 392

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 499 WTGDLPPHDVWNQTKEEHL-QVFKKRLLKC 585
           W G LPPH VW Q  + ++ Q+  K  ++C
Sbjct: 291 WGGQLPPH-VWEQWSKPYIKQIVNKIKIEC 319


>10_08_0683 -
           19860777-19861070,19861677-19861874,19862498-19862659,
           19862763-19862911,19863089-19863236,19863317-19863385,
           19863471-19863719,19863937-19864131,19864444-19864560,
           19864978-19866537
          Length = 1046

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 172 VYNPYHEWEVAFPPVPKPAVRPLDAP 249
           VY+PYH    A+P  P P   P  +P
Sbjct: 97  VYDPYHAPAAAYPSYPSPNPSPSISP 122


>08_01_1059 - 10775143-10776063
          Length = 306

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 565 KKRLLKCLICFREYQFSQLSGNHESS 642
           ++RL KC  C R++  SQ  G H+++
Sbjct: 103 RRRLFKCNYCQRKFYTSQALGGHQNA 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,077,560
Number of Sequences: 37544
Number of extensions: 440859
Number of successful extensions: 1323
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)