Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L07
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    29   0.58 
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    27   1.8  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    26   4.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.1  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   7.1  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   7.1  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.1  

>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = -1

Query: 337 TPPQNIATTTTIGKDYTPISNGAG*SVALTSPELYCWASRGRTTVPLVQEHYARATGVIL 158
           T   ++ TTT++   YT I+ G   S  LTS   +  +  G TTV +     +  T    
Sbjct: 696 TETVDVPTTTSVNYGYTTITTGWTGSTTLTSIVTHSGSETGPTTVYIETPSVSATTT--- 752

Query: 157 *TTIYGYT 134
            TT  GY+
Sbjct: 753 -TTTIGYS 759


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 412 KYVSIICSALGGTLYHVHG*HTAKDTPPQNIATTTTIGKDYTPISNGAG 266
           KYV+I  S++G   YH+     A D P    +T   + K+  P ++G G
Sbjct: 19  KYVAIAASSIGLAAYHIRKDAIALDIPN---STYQHVSKNRVPPTDGDG 64


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -1

Query: 421 LSTKYVSIICSALGGTLYHVHG 356
           LST +VS + SA+ GT+ ++HG
Sbjct: 315 LSTYFVSPLVSAIDGTVDYLHG 336


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 384  NALQIIDTYLVLSGGILMVGKAPLDRFVVHSMQVSSASEH 503
            NA +I+D  LVL   + MV    L  F   S+  + AS H
Sbjct: 1445 NACEILDLNLVLFNAVSMVFIDALGSFTTFSLSNNLASLH 1484



 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = -2

Query: 615  YKNFELSSYNNKIQVKKLRICIRYCPAALCVL 520
            ++ FELS++NN +++++ ++  R  P    +L
Sbjct: 3223 WRKFELSNWNNLLKLEEYKLSERVYPRLYSIL 3254


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 626 NGHFIRTLSYHLIIIKYRSKSYVSVSDTAQ 537
           N  F+R L YHL   +Y S  Y S  + AQ
Sbjct: 465 NERFLRRLLYHLYSCQYGSFLYNSERERAQ 494


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 257 YRLPCTIANRSVILSNRSGGCDVLRWGVLSS 349
           ++  C   +  V  SN+S G   LRW +  +
Sbjct: 50  FKKECVAYDAGVYTSNKSKGSQTLRWSIFQN 80


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -2

Query: 639 HPYIERSFYKNFELS 595
           HP+++RSF+ +F LS
Sbjct: 11  HPFLQRSFFPSFALS 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,247
Number of Sequences: 5004
Number of extensions: 70219
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)