Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_L07
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0498 - 10973243-10973345,10973850-10973882,10974104-109741... 31 1.0
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 29 3.2
05_04_0428 + 21167317-21167412,21167543-21167745,21167890-21168253 29 3.2
12_01_0785 - 7171224-7171485,7172867-7173310,7175134-7175597 29 4.2
08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195 28 5.6
05_03_0424 - 13795721-13795900,13796134-13796202,13796260-137963... 28 5.6
03_02_0882 - 12121917-12124446,12124739-12124919,12125057-121251... 28 7.4
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615... 28 7.4
09_04_0109 - 14674980-14675004,14675861-14676468 27 9.7
09_02_0589 + 10969195-10969325,10971135-10971607,10971894-109720... 27 9.7
03_03_0066 + 14214512-14215146,14215848-14216139,14216264-14216281 27 9.7
01_05_0374 - 21598480-21598487,21599547-21600672 27 9.7
>02_02_0498 -
10973243-10973345,10973850-10973882,10974104-10974166,
10975934-10976004,10976703-10976789,10976870-10976983,
10977395-10977508,10977784-10977844,10978608-10978923,
10979031-10979721,10979948-10980073,10980180-10980247,
10980314-10980449,10981109-10981238,10981266-10981382,
10981614-10981763,10982158-10982266,10982584-10982701,
10984143-10984168,10984219-10984256,10986267-10986373
Length = 925
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 381 PNALQIIDTYLVLSG-GILMVGKAPLDRFVVHSMQVSSASEHILLVY-PRHKGLLGSI 548
P A ++ ++ VL G ++ +A + S+Q S SEHILL Y RH +L SI
Sbjct: 697 PEACRLTISHAVLCRFGKVLTSRAIRAAHCLTSIQFSPTSEHILLAYGRRHNSMLRSI 754
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 346 AKDTPPQNIATTTTIGKDYTPISNGAG*SV 257
A D+ P+ +AT T + DY PI+ G SV
Sbjct: 135 AGDSTPEELATATQVQGDYMPITRGEKRSV 164
>05_04_0428 + 21167317-21167412,21167543-21167745,21167890-21168253
Length = 220
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 540 PAALCVLG-TPKVYALRQKTPACCVQRSGPGALCPPSESH 424
PAA V G P+ YA Q+ A Q GP AL PP++ +
Sbjct: 178 PAAPVVTGYPPQGYAPNQQFTAAADQVYGPSALYPPTKGY 217
>12_01_0785 - 7171224-7171485,7172867-7173310,7175134-7175597
Length = 389
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -3
Query: 347 C*GHPTAKHRNHHYDWKGLHSD*QWCRVICSTNIARAV-LLGLSWENYRPPSPGTLRKG 174
C + A H+ + ++ H D +W R CS + ++ L G + + P +P ++ G
Sbjct: 250 CSSYQVAAHQCEIHRFQSRHDDAKWARGFCSLTCSNSIPLSGSALSHDGPEAPRGMQNG 308
>08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195
Length = 837
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 457 TASLYTACRCLLPQSIYFWCTQDTKGCWAV 546
TAS T+C CL P + Q T+GCW V
Sbjct: 309 TASGETSCSCL-PGFEFSSANQTTQGCWRV 337
>05_03_0424 -
13795721-13795900,13796134-13796202,13796260-13796385,
13797224-13798166,13798263-13799248
Length = 767
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 451 PWTASLYTACRCLLPQSIYFWCTQDTK 531
PW AS+Y A CL+ +S+ C D K
Sbjct: 647 PW-ASVYAAIHCLVSRSLQVGCVLDAK 672
>03_02_0882 -
12121917-12124446,12124739-12124919,12125057-12125134,
12125731-12125764,12125864-12125975,12126053-12126238,
12126505-12126575
Length = 1063
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = -1
Query: 319 ATTTTIGKDYTPISNGAG*SVALTSPELYCWASRGRTTVPLVQEHYARATGV 164
AT T+ TPIS+ S A T P LY ++ + VPL + +ATG+
Sbjct: 740 ATKTSRLAKSTPISDEK--SSAATRPNLYNKVAKKSSVVPLESKPSKKATGI 789
>02_03_0212 -
16460665-16460766,16460971-16461298,16461379-16461502,
16461576-16461825,16462185-16462265,16463030-16463114,
16463200-16463321,16463865-16464672,16464775-16465027,
16465998-16466796
Length = 983
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = -1
Query: 442 PTIR---IPPLSTKYVSIICSALGGTLYHVHG*HT 347
PT+R +PP ST S S+ G+L+H+H H+
Sbjct: 50 PTLRSSSLPPASTPSPSSSASSSSGSLHHLHPTHS 84
>09_04_0109 - 14674980-14675004,14675861-14676468
Length = 210
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = -2
Query: 540 PAALCVLGTPKVYAL----RQKTPACCVQRSGPGALCPPSESHHSALNMYR 400
P C+L P A R ++P C +Q S G+ PPS HH+ YR
Sbjct: 61 PPGRCLLHPPPTVAASFTHRPRSPPC-LQNSKSGSP-PPSHLHHARSGSYR 109
>09_02_0589 +
10969195-10969325,10971135-10971607,10971894-10972032,
10972645-10972722,10972886-10973055,10973199-10973467,
10973655-10973781,10973964-10974035,10975084-10975273,
10975480-10975879
Length = 682
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 257 STNIARAVLLGLSWENYRPPSPGTLRKGDRG 165
S+N AR + L LS P P +LRK + G
Sbjct: 239 SSNTARIISLNLSCNQLNGPVPDSLRKNNTG 269
>03_03_0066 + 14214512-14215146,14215848-14216139,14216264-14216281
Length = 314
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -3
Query: 236 VLLGLSWENYRPPSPGTLRK 177
+LL LS +YRPPSPG R+
Sbjct: 22 LLLHLSLRSYRPPSPGGGRR 41
>01_05_0374 - 21598480-21598487,21599547-21600672
Length = 377
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -2
Query: 138 ILSDNHMKYNLLKKNITLTPRAPSRRLRQLSIVFLLFHF 22
++ N + + +L+ T+TPR P R +L ++ L + F
Sbjct: 113 VILSNQIPFFVLEDLFTMTPRVPELRDTKLKVLILYYLF 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,622,462
Number of Sequences: 37544
Number of extensions: 491948
Number of successful extensions: 1159
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -