Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L07
         (649 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M97943-1|AAB59451.1|  118|Homo sapiens TCR V-beta 6.1B protein.        33   0.88 
X74843-1|CAA52836.1|  140|Homo sapiens T-cell receptor beta chai...    32   1.5  
X61440-1|CAA43680.1|  116|Homo sapiens TCR V-beta 6.1 protein.         32   1.5  
X58329-1|CAA41241.1|  135|Homo sapiens TCRB PS7(6.1) protein.          32   1.5  
X04934-1|CAA28598.1|  141|Homo sapiens protein ( Human mRNA for ...    32   1.5  
U66059-18|AAC80206.1|  116|Homo sapiens V_segment translation pr...    32   1.5  

>M97943-1|AAB59451.1|  118|Homo sapiens TCR V-beta 6.1B protein.
          Length = 118

 Score = 33.1 bits (72), Expect = 0.88
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -2

Query: 543 CPAALCVLGTPKVYALRQKTPACCVQRSGPGA--LCPPSESHHSALNMYRLSVVH*VELY 370
           C AALC+LG     A   +TP+  V   G      C P  S H+AL  YR S+    E  
Sbjct: 7   CWAALCLLGADHTGAGVSQTPSNKVTEKGKDVELRCDPI-SGHTALYWYRQSLGQGPEFL 65

Query: 369 IMFTGS 352
           I F G+
Sbjct: 66  IYFQGT 71


>X74843-1|CAA52836.1|  140|Homo sapiens T-cell receptor beta chain
           protein.
          Length = 140

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -2

Query: 543 CPAALCVLGTPKVYALRQKTPACCVQRSGP--GALCPPSESHHSALNMYRLSVVH*VELY 370
           C AALC+LG     A   +TP+  V   G      C P  S H+AL  YR S+    E  
Sbjct: 7   CWAALCLLGADHTGAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFL 65

Query: 369 IMFTGS 352
           I F G+
Sbjct: 66  IYFQGT 71


>X61440-1|CAA43680.1|  116|Homo sapiens TCR V-beta 6.1 protein.
          Length = 116

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -2

Query: 543 CPAALCVLGTPKVYALRQKTPACCVQRSGP--GALCPPSESHHSALNMYRLSVVH*VELY 370
           C AALC+LG     A   +TP+  V   G      C P  S H+AL  YR S+    E  
Sbjct: 7   CWAALCLLGADHTGAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFL 65

Query: 369 IMFTGS 352
           I F G+
Sbjct: 66  IYFQGT 71


>X58329-1|CAA41241.1|  135|Homo sapiens TCRB PS7(6.1) protein.
          Length = 135

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -2

Query: 543 CPAALCVLGTPKVYALRQKTPACCVQRSGP--GALCPPSESHHSALNMYRLSVVH*VELY 370
           C AALC+LG     A   +TP+  V   G      C P  S H+AL  YR S+    E  
Sbjct: 7   CWAALCLLGADHTGAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFL 65

Query: 369 IMFTGS 352
           I F G+
Sbjct: 66  IYFQGT 71


>X04934-1|CAA28598.1|  141|Homo sapiens protein ( Human mRNA for
           T-cell receptor beta-chain (clone HBVP50) (Family
           Member: V beta 6.1, D beta 2.1, J beta 2.3, C beta I).
           ).
          Length = 141

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -2

Query: 543 CPAALCVLGTPKVYALRQKTPACCVQRSGP--GALCPPSESHHSALNMYRLSVVH*VELY 370
           C AALC+LG     A   +TP+  V   G      C P  S H+AL  YR S+    E  
Sbjct: 7   CWAALCLLGADHTGAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFL 65

Query: 369 IMFTGS 352
           I F G+
Sbjct: 66  IYFQGT 71


>U66059-18|AAC80206.1|  116|Homo sapiens V_segment translation
           product protein.
          Length = 116

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -2

Query: 543 CPAALCVLGTPKVYALRQKTPACCVQRSGP--GALCPPSESHHSALNMYRLSVVH*VELY 370
           C AALC+LG     A   +TP+  V   G      C P  S H+AL  YR S+    E  
Sbjct: 7   CWAALCLLGADHTGAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFL 65

Query: 369 IMFTGS 352
           I F G+
Sbjct: 66  IYFQGT 71


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,728,858
Number of Sequences: 237096
Number of extensions: 2788560
Number of successful extensions: 5322
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5319
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)