Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L06
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...   181   8e-47
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    28   1.2  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    27   2.7  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    27   2.7  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    26   3.6  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   3.6  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    26   4.8  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    25   6.3  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    25   6.3  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   8.4  

>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score =  181 bits (440), Expect = 8e-47
 Identities = 79/154 (51%), Positives = 114/154 (74%)
 Frame = +2

Query: 89  LKNNWFTETCEMWPGGTFTFEVNEVLHSEQSEYQYIQVFDTTSYGRVLVLDGIIQCTQKD 268
           +K+ WF E   MWPG   T +V +VL++ +S+YQ + VF++ +YG VLVLDG IQ T++D
Sbjct: 11  IKDGWFREINNMWPGQAMTLKVKKVLYAGKSKYQDVLVFESETYGHVLVLDGAIQATERD 70

Query: 269 EFSYQEMISFLPLCCHKNPERVLIVGGGDGGVAREVAKHPKVKKIVQVEIDAKVIEVSKK 448
           EFSYQEMI+ L L  H NP++VL++GGGDGGV REV KH  V++ +  +ID  VI+VSK+
Sbjct: 71  EFSYQEMIAHLALNSHPNPKKVLVIGGGDGGVLREVVKHECVEEAILCDIDEDVIKVSKQ 130

Query: 449 YLPFLAVGFESEKLELHVGDGFESLKEHSQEFDV 550
           YLP ++ GF   K+++H+GDGF+ L+++   FDV
Sbjct: 131 YLPEMSAGFNHPKVKVHIGDGFKFLQDYQNTFDV 164



 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 549 LIITDSSDPIGPGVSL 596
           +IITDSSDP GP  +L
Sbjct: 164 VIITDSSDPDGPAEAL 179


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 228 TLP*LVVSNTCIYWYSDCSECSTSFTSNVNVPPGHISHVSVNQL 97
           TL  LV +     W      C  S  +N ++ PG +  V VNQL
Sbjct: 310 TLAKLVATQCHRLWLVQSPSCPPSPKNNAHLSPGSMGGVKVNQL 353


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +2

Query: 278 YQEMISFLPLCCHKN---PERVLIVGGGDGGVAREVAK 382
           Y++++S L L   +N   PE VLIV   +G + RE  K
Sbjct: 410 YKDILSTLRLVMIENMVKPEEVLIVENDEGEIVREFVK 447


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +2

Query: 371 EVAKHPKVKKIVQVEIDAKVIEVSK-KYLPFLAVGFESEKLELHVGDGFESLKEHSQEFD 547
           E ++ P++ +++  E+D ++ E  K K +P     F  E L L   DGF  L     E D
Sbjct: 301 EESESPELDELL--ELDYQIGEDFKEKLIPRAVEWFTGEALALENYDGFSDLDVEEDEDD 358

Query: 548 VD 553
           V+
Sbjct: 359 VE 360


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 117 HVSVNQLFFKLFIMVPVAI 61
           H  VN+L  KLF+++P AI
Sbjct: 347 HTLVNELTLKLFVVIPPAI 365


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 572 VAAVGDDQRRIPGCVPSRIRIRPRRATLISHSRNRPPRM 456
           VA   +DQR +    P+  + +P    L+S + N  PR+
Sbjct: 216 VAPSNEDQRTMESTSPTDSQPQPSAPNLVSSTENEKPRV 254


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
 Frame = +2

Query: 335 LIVGGGDGGV--AREVAKH 385
           L++GGG GG+  AR  AKH
Sbjct: 11  LVIGGGSGGLASARRAAKH 29


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 251 QCTQKDEFSYQEMISFLP 304
           +C+QKD   YQE  SF P
Sbjct: 326 RCSQKDAQIYQEWYSFFP 343


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 251 QCTQKDEFSYQEMISFLP 304
           +C+QKD   YQE  SF P
Sbjct: 280 RCSQKDAQIYQEWYSFFP 297


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/46 (21%), Positives = 25/46 (54%)
 Frame = +2

Query: 155  NEVLHSEQSEYQYIQVFDTTSYGRVLVLDGIIQCTQKDEFSYQEMI 292
            N+V  +     ++++ F+ T Y   +  D II  T++++F  ++ +
Sbjct: 900  NDVGGASMGGEEFLKQFEVTDYKADVSWDDIIPLTEREKFEEEDRL 945


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,474,783
Number of Sequences: 5004
Number of extensions: 50253
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)