Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L05
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315...    31   0.63 
04_02_0006 + 8455219-8457469,8457560-8457924                           29   3.3  
01_04_0066 - 15654796-15655098,15655268-15655392,15657249-156576...    29   4.4  
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97...    28   5.9  
12_02_0412 - 18799217-18801061                                         28   7.7  
05_04_0113 + 18085705-18085833,18086442-18086885                       28   7.7  
02_03_0247 - 16809742-16809780,16810070-16810298,16810381-168105...    28   7.7  

>08_02_1455 +
           27230134-27231110,27231195-27231327,27231417-27231501,
           27233372-27233571
          Length = 464

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 25/71 (35%), Positives = 32/71 (45%)
 Frame = -3

Query: 368 NPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVP 189
           +PG    V  +P P  LSSA  A AA S+  L  S  P A       P     +P P++P
Sbjct: 17  SPGQPPVVPRSPTPLDLSSAAAAAAAASYRRLSPSLRPPA------HPQARLPSPYPQIP 70

Query: 188 SELSVRAPCAS 156
           S  S  A  +S
Sbjct: 71  SSSSAAAAGSS 81


>04_02_0006 + 8455219-8457469,8457560-8457924
          Length = 871

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -3

Query: 401 FTLPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSL 228
           F  P +V+L  N G+C ++ +   P   SS  PA    +  LL+K    I + +F +L
Sbjct: 437 FQRPNSVSLEGNKGLCANIHILNLPICPSS--PAKTKNNKRLLLKVIPSITIALFSAL 492


>01_04_0066 -
           15654796-15655098,15655268-15655392,15657249-15657603,
           15658236-15658405,15659404-15659608
          Length = 385

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = -2

Query: 648 EAGVEIDRGVRTLEE---VQLSVQGVIVTIDEVRVSGGR*CTNLIF--EHIVYSATDSVE 484
           +A V +D    T E+     LS+ G  V I+EV+ +  R C  ++   + +  +A DSV 
Sbjct: 128 DASVLLDSASNTAEKNAAPNLSLAGFEV-IEEVKAAVERECAGVVSCADIVALAARDSVS 186

Query: 483 VGYXSDIWHISGG 445
             Y   +W +  G
Sbjct: 187 YQYRRSLWEVETG 199


>09_01_0066 -
           978018-978500,978588-979034,979113-979412,979521-979855,
           980325-980703
          Length = 647

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = -3

Query: 356 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 183
           C S  L   P ++ SA   +  P+ C L+    P     F  L A+G    P PE     
Sbjct: 467 CASTELAENPTSVDSAVDHITEPTSCTLIVRVMP----TFTVLAAEGLAYKPTPETRVHG 522

Query: 182 LSVRAPCASLR 150
             +RA CA ++
Sbjct: 523 AQLRADCAKVQ 533


>12_02_0412 - 18799217-18801061
          Length = 614

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 510 VYSATDSVEVGYXSDIWHISGGESLRCDVV 421
           +YS+   +E G   D+W+I GG  L   V+
Sbjct: 23  IYSSETDLEEGVFHDVWNICGGMPLAMIVI 52


>05_04_0113 + 18085705-18085833,18086442-18086885
          Length = 190

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
 Frame = +1

Query: 118 EEPELLTSSRVRRDAHGALTLNSD-------GTSGAGVKVPFAGNDKNIVSAIGSLDL-- 270
           E+    TS+R R    G LT+ ++       G  GAG ++P AG D    +  G   +  
Sbjct: 30  EDSPAATSTRKRLVGSGKLTIVAEIPRLALGGGGGAGERLPAAGEDSAAATNTGKCQVVG 89

Query: 271 TNRQKLGAATAGVALD 318
           ++   + AA+AG+  D
Sbjct: 90  SSLAAMVAASAGIQPD 105


>02_03_0247 -
           16809742-16809780,16810070-16810298,16810381-16810551,
           16810630-16811516,16811604-16812050,16812129-16812836
          Length = 826

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
 Frame = -3

Query: 356 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 183
           C S  L   P ++ SA   +  P+ C L     P     F  L A+G    P PE     
Sbjct: 365 CASTELAENPTSIDSAVDHITEPTSCTLTVRVMP----TFTVLAAEGLAYKPTPETTVHG 420

Query: 182 LSVRAPCASLR 150
             +RA CA ++
Sbjct: 421 AQLRADCAKVQ 431


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,707,208
Number of Sequences: 37544
Number of extensions: 406814
Number of successful extensions: 1297
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)