Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_L03
(585 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 32 0.054
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 32 0.071
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.66
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 26 3.5
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 3.5
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 26 4.7
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 6.2
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 6.2
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 25 8.1
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 32.3 bits (70), Expect = 0.054
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 287 IQTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAAS-EEREHAMKLIDYLLMRGELISD 463
I +++A + + G + V+ + G LF+ S REH +KLI +L +
Sbjct: 287 IVNDLEACLDDIDKGLILNDHVLEKTGRTSLFYLPCSIYGREHEIKLIRKILRNSPRAIN 346
Query: 464 VSDLITVENFEPVYFNS 514
D +E F P Y N+
Sbjct: 347 HQDKKDLETFNPYYLNA 363
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 31.9 bits (69), Expect = 0.071
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +1
Query: 82 FLQRQSI*INRQSICDFNYKNEGFISCNRRYPGCLYACYRYTMSREPSKCILRMGDNAQS 261
FLQ Q I R ++C KN + C C Y C++ + +KCI + D+A S
Sbjct: 408 FLQHQFYQIMRCALCGEFLKNAAGMQCI----DCHYTCHKKCYPKVVTKCISKSSDSASS 463
>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 28.7 bits (61), Expect = 0.66
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = -2
Query: 335 GHPLPDIVRTRPPQFVFAR--ACCLYKDCALSPIRRIHLLGSRDIV*R 198
GHP P V T PP + C YK C R IH SR++ R
Sbjct: 231 GHPSPATVTTLPPFMSMSTIPIPCKYKPCLNPACRFIHPTKSRNMTWR 278
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 470 DLITVENFEPVYFNSGADALEAALNMESFV 559
DLI E FEP+ G D L +L + +FV
Sbjct: 176 DLINPEWFEPIVMILGDDDLNVSLAVSNFV 205
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 3.5
Identities = 26/89 (29%), Positives = 44/89 (49%)
Frame = -1
Query: 495 SKFSTVIRSLTSEISSPLMSK*SISFIACSLSSLAASKNSFANPGRLITSREKWAPIARY 316
S FS+V L+S SSP S S+S + S SS +S S ++P + +S + I
Sbjct: 571 STFSSVSSILSSSTSSP--SSTSLSISSSSTSSTFSSA-STSSPSSISSSISSSSTILSS 627
Query: 315 CTDASTSVCICACMLSLQGLCIVTHSEDT 229
T +++S+ I + + I++ S T
Sbjct: 628 PTPSTSSLMISSSSIISGSSSILSSSIST 656
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 290 QTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLIDYL 436
+T DA + L +G H D NRP AKL + + + L DY+
Sbjct: 410 KTFYDAFSKNLKLGIH--EDAANRPALAKLLRYNSLNSPDDLISLEDYI 456
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.4 bits (53), Expect = 6.2
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 245 VTMHNPCKDSMHAQIQTEVD-ASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMK 421
+T+ +P K+ ++T + AS+Q + ++ N P F DAASEE EH
Sbjct: 372 ITVTDPSKNLYERSVKTAAELASLQNVTETT--DNEIPNSPDF----LDAASEEDEHIPS 425
Query: 422 L 424
L
Sbjct: 426 L 426
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 118 SICDFNYKNEGFISCNRRYPGCLYACYRY 204
++CD + + + CNR+YP C C +Y
Sbjct: 54 TVCDVSSNSTFVVKCNRQYP-CT-RCLKY 80
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 449 ELISDVSDLITVENFEPVYFNSGADALEAALNMESFVT 562
+L +++SDL+ + ++ ++G +A EAAL M T
Sbjct: 96 QLATELSDLLPDGLDKTLFLSTGGEANEAALRMAKVYT 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,092
Number of Sequences: 5004
Number of extensions: 48449
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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