Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_L03
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 64 6e-11
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 52 4e-07
04_01_0213 - 2692253-2694562 31 0.51
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 29 2.1
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916... 29 2.7
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 29 2.7
06_03_1183 + 28237467-28237612,28238035-28238089,28238216-282383... 28 4.8
05_01_0372 - 2913518-2916562,2916674-2917528 28 4.8
03_05_0067 - 20460206-20460703,20461255-20461530 28 4.8
08_02_0290 + 15383473-15383669,15385057-15385267,15386389-153864... 28 6.3
10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909... 27 8.3
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 27 8.3
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 27 8.3
01_05_0554 + 23221374-23222017,23222158-23222296 27 8.3
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 64.5 bits (150), Expect = 6e-11
Identities = 35/106 (33%), Positives = 57/106 (53%)
Frame = +2
Query: 263 CKDSMHAQIQTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLIDYLLM 442
C+ ++ QI E +AS Y ++ A+F RD + GFAK F +++ EER+HA KL+ Y M
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150
Query: 443 RGELISDVSDLITVENFEPVYFNSGADALEAALNMESFVTKSIRGV 580
RG + S + + F+ A+E AL +E V + + +
Sbjct: 151 RGGRVRLQSIVTPLTEFDHPEKGDALYAMELALALEKLVNEKLHNL 196
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 51.6 bits (118), Expect = 4e-07
Identities = 25/51 (49%), Positives = 34/51 (66%)
Frame = +2
Query: 296 EVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLIDYLLMRG 448
E +AS Y ++ A+F RD + GFAK F +++ EER+HA KLI Y MRG
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRG 184
>04_01_0213 - 2692253-2694562
Length = 769
Score = 31.5 bits (68), Expect = 0.51
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = -3
Query: 460 RNKLSPHEQVVDQLHRMLPLFASRVEEQLRESWTIDH---VTGEMGTHCQILYGRVHLSL 290
R K+ +EQ++ H ML + + + +D V E ++LY V + L
Sbjct: 201 RRKMDNNEQILLAAHDMLHITKGAFIDNMAYEHDVDKQEIVRPETWNENEMLYDVVDMEL 260
Query: 289 YLRVHAVFTRIVHCHPFGGY 230
L ++T+ H +GGY
Sbjct: 261 SLMYDILYTKAAMVHTWGGY 280
>08_02_0749 - 20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = -3
Query: 376 LRESWTIDHVTGEMGTHCQILYGRVHLSLYLRVHAVFTRIVHCHPFGGYICWVHVTLYSD 197
L+ SW+ + GT C G LS++LRV+ TR+ +P G I T+
Sbjct: 880 LKCSWSTTCIDDGSGTMCAGSTGEKALSVHLRVNGE-TRMYEMNP-GHVIAGSSATVNQS 937
Query: 196 SRRRDSQGTD 167
R D G D
Sbjct: 938 ERVNDGLGDD 947
>07_03_0603 -
19890664-19890823,19891104-19891329,19891498-19891636,
19891849-19891942,19892291-19892311,19892506-19892941,
19893133-19893280,19893369-19893476,19893543-19893659,
19893960-19894016,19894488-19894553,19895140-19895328,
19895410-19895523,19895684-19895766,19895857-19896322,
19896832-19897476
Length = 1022
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 412 MLPLFASRVEEQLRESWTIDHVTGEMGTH 326
M P A+ + + LRE ++D VT MG+H
Sbjct: 169 MTPAMAASLRDSLREVCSLDDVTERMGSH 197
>03_02_0143 -
5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = -1
Query: 477 IRSLTSEISSPLMSK*S-ISFIACSLSS-LAASKNSFANPGRLITSREKWAPIARYCTDA 304
+++L +E++S + S ++ + L+ + +KN ++T+ EKW I R +D
Sbjct: 497 MKALAAEVTSTFSRRLSPLNLVVRELTGDMQLTKNEIEETQMIVTTPEKWDVITRKSSDM 556
Query: 303 STSVCI 286
S S+ +
Sbjct: 557 SLSMLV 562
>06_03_1183 +
28237467-28237612,28238035-28238089,28238216-28238354,
28238433-28238487,28238578-28238646,28239338-28239560,
28239645-28239740,28240708-28240827,28240937-28241062,
28241369-28241524,28242706-28242828,28242913-28242980,
28243119-28243254,28243365-28243530,28243615-28243853
Length = 638
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 266 KDSMHAQIQTEVDASVQYLAMGA-HFSRDVINRPGFAKLF 382
++ M A++Q + YL A FS +V+N+PGF ++
Sbjct: 131 RNCMSARLQLTISKRSHYLVTFACWFSENVMNKPGFVDIY 170
>05_01_0372 - 2913518-2916562,2916674-2917528
Length = 1299
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = -3
Query: 544 VQSSLQSIGPAIEVYRFEVFDGDKIADVRNKLSPHEQVVDQLHRML-PLFA-SRVEEQLR 371
V S + A+E+ E + +K + + P V D M+ P+ A S VEE
Sbjct: 250 VVSEANGVAAAVELAVEEKLEDNKGEEEEMEAKPEPVVDDTSSEMIAPVSAESAVEESTE 309
Query: 370 ESWTIDHVTGEMGTH 326
+ T+D + EM H
Sbjct: 310 KEQTVDDTSSEMIAH 324
>03_05_0067 - 20460206-20460703,20461255-20461530
Length = 257
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 428 DYLLMRGELISDVSDLITVENFEPVY 505
DY + G+L SDV+DLI + F+ Y
Sbjct: 159 DYTIFVGDLASDVTDLILQDTFKAHY 184
>08_02_0290 +
15383473-15383669,15385057-15385267,15386389-15386440,
15386545-15386863,15387022-15387121,15387391-15387657,
15387780-15387857,15387943-15388032,15388119-15388168,
15388267-15388366,15388777-15388875,15389023-15389136,
15389238-15389412,15389726-15390132,15390565-15390639,
15391412-15391438
Length = 786
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -3
Query: 493 EVFDGDKIADVRNKLSPHEQVVDQLHRMLPLFASRVEEQLRESW 362
E F D+I+ V +L E VD+L P E L ESW
Sbjct: 695 ETFSVDRISPVIERLQRLEGKVDELGNKPPEIPLEKERSLLESW 738
>10_07_0061 +
12489552-12489674,12490761-12490836,12490916-12490980,
12491089-12491166,12492156-12492236,12492813-12492974,
12493328-12493426,12493509-12494797,12495063-12495286,
12495373-12495500,12495596-12495634,12495724-12497178
Length = 1272
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = -3
Query: 493 EVFDG-DKIADVRNKLSPHEQVVDQLHRMLPLFASRVEEQLRESWTIDHVTGEMGTHCQI 317
E DG DK D ++P V+DQ P + + + + W +GE +
Sbjct: 451 EQMDGMDKSKDTLQAMAPENSVLDQQQPQAPHLSQQAGPRNMQQWQNPRFSGEKDLKKEE 510
Query: 316 LYGRVHLSLYLRVHAV 269
+ R ++ RV +V
Sbjct: 511 MLQRRKIAATSRVSSV 526
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 27.5 bits (58), Expect = 8.3
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 374 KLFFDAASEEREHAMKLIDYLLMRGELISDVSDLITVENFEPVYFN-SGADALEAALNME 550
+L + +A E+R+ DY + G+L +DV+D I E F Y + GA + + M
Sbjct: 169 RLNWASAGEKRDDTP---DYTIFVGDLAADVTDYILQETFRVHYPSVKGAKVVTDKMTMR 225
Query: 551 S 553
S
Sbjct: 226 S 226
>07_03_1503 +
27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 293 FVFARACCLYKDCALSPIRRIHLLGSRDI 207
F+ A C Y+DC S +R + G RD+
Sbjct: 514 FLCEWATCDYRDCRTSLLRNVKFTGRRDL 542
>01_05_0554 + 23221374-23222017,23222158-23222296
Length = 260
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -1
Query: 552 DSMFRAASKASAPLLKYTGSKFST-VIRSLTSEISSPLMSK*SISFIACSLSSLAASKNS 376
D +F A +P + G + ++ SLT + S+PL S+ + ++ SKNS
Sbjct: 51 DLIFFPGLGAKSPRSSFLGDRVGLGLVDSLTDDSSTPLGSRKVLLGSEMRITDNVTSKNS 110
Query: 375 FANP 364
F P
Sbjct: 111 FTAP 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,816,813
Number of Sequences: 37544
Number of extensions: 326831
Number of successful extensions: 837
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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