Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_L02
(583 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 27 1.5
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 27 2.0
SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.5
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 26 3.5
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo... 25 6.1
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 6.1
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 8.1
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 8.1
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 8.1
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.1
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 8.1
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 27.5 bits (58), Expect = 1.5
Identities = 10/39 (25%), Positives = 24/39 (61%)
Frame = +1
Query: 106 KYKGYDAHLNPSISNVFATAALRFGHSMINPILHRYDEN 222
++K +++++ ++ + + ALR H + PI+H Y+ N
Sbjct: 356 EWKVWESYVTDNLQSALSLDALRSSHPIEVPIMHDYEIN 394
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 196 PILHRYDENFETIPQGHLLLRH 261
PIL D NFE +P GH +L+H
Sbjct: 516 PILQMSDVNFEYVP-GHPILKH 536
>SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 218
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 283 IVDEGGVDPLLRGMFTTPAKLKTPTQNLNSELTEKLFYSTHAVALDLAAI 432
+VDE G+D L++ F P + P + +LF T A D+ +I
Sbjct: 144 VVDENGLDDLIQQAFKNPNDVFQPLPSKRDGDNMRLFIETEEEA-DMTSI 192
>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 505
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 113 LYFPNCSIPLGPKII 69
LYFPN + P+GP II
Sbjct: 421 LYFPNWTYPVGPYII 435
>SPAC8E11.01c
||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 25.4 bits (53), Expect = 6.1
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 217 ENFETIPQGHLLLRHAFFSPWRIVDEGGVDPLLRGMFTTPAKLKTPTQNLNSE 375
+ F P G ++ ++ S W ++ + RGMFT P +L +LN E
Sbjct: 269 QTFGNAPDGRVI-SISWASNWNYTNDVPMRMKHRGMFTIPRELTLCYTHLNQE 320
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 437 IFMAAKSKATAWVL*KSFSVSSELRFWVGVFSLAGVVNI 321
I+MA +W L ++R W +F GVV I
Sbjct: 392 IYMAEMQVGKSWTLTDLADAFLDVRLWPPIFMFFGVVGI 430
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 443 LWIFMAAKSKATAWVL 396
LWIF A S TAWV+
Sbjct: 121 LWIFSVAMSFFTAWVI 136
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 443 LWIFMAAKSKATAWVL 396
LWIF A S TAWV+
Sbjct: 121 LWIFSVAMSFFTAWVI 136
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 443 LWIFMAAKSKATAWVL 396
LWIF A S TAWV+
Sbjct: 121 LWIFSVAMSFFTAWVI 136
>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 253
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 331 TPAKLKTPTQNLNSEL 378
TP + KTPT N NSEL
Sbjct: 220 TPIRRKTPTINPNSEL 235
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 443 LWIFMAAKSKATAWVL 396
LWIF A S TAWV+
Sbjct: 121 LWIFSVAMSFFTAWVI 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,407,559
Number of Sequences: 5004
Number of extensions: 48434
Number of successful extensions: 116
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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