Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_L02
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0196 - 15374814-15374997,15375304-15375547,15376035-153762... 36 0.024
11_06_0730 - 26728241-26729335,26729998-26730660 28 4.7
04_01_0106 + 1102880-1105691,1105781-1105806 28 4.7
12_02_0868 - 23839077-23839382,23839626-23839935,23840003-238401... 28 6.2
06_01_1116 + 9197761-9199956 28 6.2
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 27 8.2
06_01_0645 + 4670966-4671021,4671128-4671177,4671270-4671350,467... 27 8.2
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305... 27 8.2
>12_02_0196 -
15374814-15374997,15375304-15375547,15376035-15376237,
15377275-15377502,15377674-15377819,15378020-15378233,
15378410-15378543,15378986-15379135,15379892-15380155,
15380962-15381051
Length = 618
Score = 35.9 bits (79), Expect = 0.024
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +1
Query: 415 LDLAAINIQRGRDHGIPPYTKWRQFCNMTVVNDFDDLAGEISDKSVRDKLSELYG 579
+DLAA+ + R R+ +P Y ++R+ + + ++DL SDK + + +YG
Sbjct: 470 IDLAALEVYRDRERSVPRYNEFRRRLFLIPIKSWEDLT---SDKDAIETIRAIYG 521
>11_06_0730 - 26728241-26729335,26729998-26730660
Length = 585
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +3
Query: 114 RLRCSSKSFNFKRFCNSCFALWTFDD*SYTTSLR*KF*DYTTRTFT 251
RL C S+ F+F R C S F +W+ + S R F D T T T
Sbjct: 174 RLSCLSRQFDFIRCCQSLF-IWSVNWFEVARSYRDWFYDATGITAT 218
>04_01_0106 + 1102880-1105691,1105781-1105806
Length = 945
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 415 LDLAAINIQRGRDHGIPPYTKWRQFCNMTVVNDFDDLAGE 534
L L +N+Q R I P FCN+T++ F+ +GE
Sbjct: 789 LSLRELNLQNSR-LSIDPLPSLSNFCNLTLLGLFNTYSGE 827
>12_02_0868 -
23839077-23839382,23839626-23839935,23840003-23840128,
23840202-23840436,23840649-23840684,23841033-23841162,
23841318-23841410,23841556-23841678,23841769-23841835,
23841937-23842028,23842136-23842291
Length = 557
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = -3
Query: 440 WIFMAAKSKATAWVL*KSFSVSSELRFWVGVFS---LAGVVNIPRNKGSTPP 294
W+ + K + + WV + F S W+GVFS + + P NK PP
Sbjct: 47 WV-LGLKGQNSEWVEVEFFHPSPSNDDWIGVFSPANFSAAICEPENKRQRPP 97
>06_01_1116 + 9197761-9199956
Length = 731
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 464 GIPWSRPLWIFMAAKSKATAWV-L*KSFSVSSELRFWVGVFS 342
G+P +W+ A +K A V K S S E+RFW ++S
Sbjct: 266 GVPEELCVWVSYIAVAKKEACVDQNKGVSYSEEMRFWCELYS 307
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 268 FSPWRIVDEGGVDPLLRGMFT 330
F PW V+ GG+D L +G T
Sbjct: 39 FKPWNKVERGGLDDLEKGKMT 59
>06_01_0645 +
4670966-4671021,4671128-4671177,4671270-4671350,
4671862-4672078,4673220-4673607,4673830-4674033,
4675174-4675334,4675401-4675586,4675732-4675963,
4676530-4676732,4677074-4677208,4677367-4677550
Length = 698
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +1
Query: 94 EQLGKYKGYDAHLNPSISNV----FATAALRFGHSMINPILHRY 213
+QLGK GY + S SN + T L ++++P+L +Y
Sbjct: 103 DQLGKKVGYSIRFDDSTSNATRIKYMTDGLLLREALLDPLLSKY 146
>02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,
3052308-3052377,3052417-3052668,3053235-3055297
Length = 1520
Score = 27.5 bits (58), Expect = 8.2
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Frame = +1
Query: 292 EGGVDPLLRGMFTTPAKLKTPTQNLNSELTEKLFYSTHAVALDL--------------AA 429
EG + P L G T+ ++L +L+ L +L S+ + LD+ +
Sbjct: 834 EGQISPSL-GELTSLSRLNLSYNSLSGGLPVELMSSSSIIVLDVCFNRLGGEVQELNSSV 892
Query: 430 INIQRGRDHGIPPYTKWRQFCNMTVVN 510
+NI R G P T W + N+ V+N
Sbjct: 893 LNISSNRFTGDFPSTTWEKMRNLVVIN 919
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,976,268
Number of Sequences: 37544
Number of extensions: 292841
Number of successful extensions: 660
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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