Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_L01
(553 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical... 29 2.2
Z81564-6|CAB04572.1| 678|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z81097-10|CAB03169.1| 492|Caenorhabditis elegans Hypothetical p... 28 3.9
DQ384615-1|ABD34785.1| 492|Caenorhabditis elegans ERGIC-53-like... 28 3.9
AF016853-1|AAB94552.1| 678|Caenorhabditis elegans HMP-2 protein. 28 3.9
AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical ... 28 5.1
U58757-9|AAM75377.1| 503|Caenorhabditis elegans Hypothetical pr... 27 6.8
U58757-8|AAC47918.3| 506|Caenorhabditis elegans Hypothetical pr... 27 6.8
U34661-1|AAA92006.1| 962|Caenorhabditis elegans ionotropic glut... 27 6.8
L16559-2|AAA27933.3| 962|Caenorhabditis elegans Glutamate recep... 27 6.8
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 27 9.0
>AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical
protein Y71H2AM.5 protein.
Length = 121
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 48 QVSMPPSYKERYPEYY-KFSKQARHPRDVTWDK 143
+V +PP+ ER +Y KFS RHP W K
Sbjct: 4 EVEVPPTTYERLQQYKEKFSDALRHPDSPDWYK 36
>Z81564-6|CAB04572.1| 678|Caenorhabditis elegans Hypothetical
protein K05C4.6 protein.
Length = 678
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -3
Query: 284 TQNPGAVCLPFQLTAIV--IEKLPRVSSFTE*SIVILSECTEYFSVA 150
T+N VC + A+V I +LP V TE ++ L CT S+A
Sbjct: 362 TRNKQTVCSHGGIDALVTAIRRLPEVEEVTEPALCALRHCTARHSLA 408
>Z81097-10|CAB03169.1| 492|Caenorhabditis elegans Hypothetical
protein K07A1.8 protein.
Length = 492
Score = 28.3 bits (60), Expect = 3.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 333 KNANAALDISKQIGGRPNLSASGAGVW 413
++ N +DI+ +IGG+ + A G G+W
Sbjct: 83 ESENFQVDIALKIGGQGRVGADGLGIW 109
>DQ384615-1|ABD34785.1| 492|Caenorhabditis elegans ERGIC-53-like
protein protein.
Length = 492
Score = 28.3 bits (60), Expect = 3.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 333 KNANAALDISKQIGGRPNLSASGAGVW 413
++ N +DI+ +IGG+ + A G G+W
Sbjct: 83 ESENFQVDIALKIGGQGRVGADGLGIW 109
>AF016853-1|AAB94552.1| 678|Caenorhabditis elegans HMP-2 protein.
Length = 678
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -3
Query: 284 TQNPGAVCLPFQLTAIV--IEKLPRVSSFTE*SIVILSECTEYFSVA 150
T+N VC + A+V I +LP V TE ++ L CT S+A
Sbjct: 362 TRNKQTVCSHGGIDALVTAIRRLPEVEEVTEPALCALRHCTARHSLA 408
>AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical
protein Y55B1AL.3a protein.
Length = 923
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = -1
Query: 496 PWNATSGFPRPIVLSDPPADKRVFLSKFHTPAPLADRFGLPPICLLISRAAFAFLLD 326
P ++T P P+ ++ PPA KR + T P+ + G PP+ + R++ + L D
Sbjct: 49 PSSSTENEPPPVSVTSPPARKRAL--EESTVTPIQQKIG-PPV---LKRSSLSKLAD 99
>U58757-9|AAM75377.1| 503|Caenorhabditis elegans Hypothetical
protein C01B10.6b protein.
Length = 503
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Frame = -1
Query: 286 GPKTLVPYA-CPSNLPRSSLKNCRVYPALPNNPSSFCPSVPNTFPLPM 146
G L PY C N+ +C P + P CP T P P+
Sbjct: 364 GQNALSPYGVCYKNICSDQCFSCACSPGAKSPPDQSCPKPSPTDPTPV 411
>U58757-8|AAC47918.3| 506|Caenorhabditis elegans Hypothetical
protein C01B10.6a protein.
Length = 506
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Frame = -1
Query: 286 GPKTLVPYA-CPSNLPRSSLKNCRVYPALPNNPSSFCPSVPNTFPLPM 146
G L PY C N+ +C P + P CP T P P+
Sbjct: 367 GQNALSPYGVCYKNICSDQCFSCACSPGAKSPPDQSCPKPSPTDPTPV 414
>U34661-1|AAA92006.1| 962|Caenorhabditis elegans ionotropic
glutamate receptor subunitprotein.
Length = 962
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 488 VPRSIPARFLKRMWWFLNFII 550
+PRSI R WWF II
Sbjct: 657 LPRSISGRIASSAWWFFTMII 677
>L16559-2|AAA27933.3| 962|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 1 protein.
Length = 962
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 488 VPRSIPARFLKRMWWFLNFII 550
+PRSI R WWF II
Sbjct: 657 LPRSISGRIASSAWWFFTMII 677
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
autosome protein2 protein.
Length = 1758
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = -1
Query: 316 LPPKFEVSPAGPKTLVPYACPSNLPRSSLKNCRVYPALP---NNPSSFCPSVPNTFPLP 149
LPP + P P A P N PR++L ++ P P +PS S P T +P
Sbjct: 1278 LPPANTIMPPPPPYNQASAVPLNPPRTALPPLQLPPLQPLQSESPSWASMSAPPTALIP 1336
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,319,373
Number of Sequences: 27780
Number of extensions: 342008
Number of successful extensions: 1032
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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