Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K24
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    27   1.2  
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    26   2.7  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    26   2.7  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   4.8  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   6.3  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   6.3  

>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +2

Query: 116 RYARSLSTPN--KYHGGSHTISKSSQSTGPTHPGYNRRH 226
           +Y +S  T    K H GS+ + +   S    HPG  R H
Sbjct: 862 QYRKSCETQRSRKSHEGSNDLERQPSSPDTVHPGIKRSH 900


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 263 HDAYCYANRNYVHDVCCNLDESVLCFDCF*I*YDYLHGICLEYSNCE 123
           HD +C+ + +Y HD+   LD  +L  D   + + Y      E S  E
Sbjct: 231 HD-HCHVSSDYTHDIAHALDRDILERDEIVLQFPYTEAAAQEKSQEE 276


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 80  SIIDDIKLNPHTRYARSLSTPNKYH 154
           S+ DD K N  + Y RSLS   +YH
Sbjct: 257 SMRDDKKRNHKSSYKRSLSPSTRYH 281


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 237 SIRVAVSIMVEALRRLVVARTPAKLIQ 317
           ++RVA S+ V  + R   ARTP++L Q
Sbjct: 316 TVRVASSLAVRPVSRNAQARTPSRLEQ 342


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 133 EYSKQIPWR*SYYI*KQSKHRTDSSRLQ 216
           +Y   + WR +Y I +++KH T+S   Q
Sbjct: 284 KYISYLKWRKAYLIIQENKHLTESGLSQ 311


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +2

Query: 5   DEPLWLFKDNNEP---RAPSTGDH 67
           D+ LW++ D NEP   R P T  H
Sbjct: 516 DKNLWIWNDMNEPSVFRGPETSMH 539


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,872,605
Number of Sequences: 5004
Number of extensions: 35126
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)