Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K24
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155           29   2.1  
02_02_0322 - 8938101-8938149,8938235-8938458,8938545-8938605,893...    29   2.7  
12_02_1265 - 27435096-27437675                                         28   3.6  
02_05_0327 + 27980841-27980972,27981673-27981763,27981848-279819...    27   8.4  

>07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155
          Length = 220

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 210 VTTDVMYVVSIRVAVSIMVEALRRLVVARTPAKLIQATTAVMLSL 344
           V T ++  V+I  AV   V A+RR  +ARTPA L      ++  L
Sbjct: 54  VATQLVVTVAIAAAV-YSVPAIRRFFLARTPASLAAFVLVIVAPL 97


>02_02_0322 -
           8938101-8938149,8938235-8938458,8938545-8938605,
           8938724-8940761,8940797-8940908,8942037-8942047,
           8942293-8942443
          Length = 881

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +2

Query: 35  NEPRAPSTGDHPVLPSIIDDIKLNPHTRYARSLSTPNKYHGGSHTISKSSQSTGPTHPG 211
           + PRA  TGD      I    K+N      R+    N Y      + K+ +  GP +PG
Sbjct: 710 DHPRAVKTGDSFFTNLIKKSFKINNGMGNGRAKVFINGYPISDRAVRKAEKIAGPIYPG 768


>12_02_1265 - 27435096-27437675
          Length = 859

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +2

Query: 38  EPRAPSTGDHPVLPSIIDDIKLNPHTRYARSLSTPNKYHGGSHTISKSSQST 193
           EP + +T +HP  P ++ +  + P  + ARS+S       G +T   + +ST
Sbjct: 99  EPASGNTSNHPRTPQVLGNDYVQPSKQTARSISHSAIAGAGVYTELVNLKST 150


>02_05_0327 +
           27980841-27980972,27981673-27981763,27981848-27981900,
           27981990-27982154,27982544-27982662,27982880-27982997,
           27983096-27983173,27983326-27983424
          Length = 284

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 386 VINSLFYLCT--FDFILVIFVMYNI*GKIRIVNYHKL 490
           ++N ++YL        LV+F++  I  K+R+  YH L
Sbjct: 245 ILNFIYYLIVEILPSSLVLFILRRIPSKLRLAQYHPL 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,687,354
Number of Sequences: 37544
Number of extensions: 217354
Number of successful extensions: 505
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)