Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K24
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    30   1.1  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    30   1.1  
U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of c...    28   3.3  
AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrat...    28   3.3  
AF014940-1|AAB63933.1|  143|Caenorhabditis elegans Hypothetical ...    28   3.3  
Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U41271-3|AAP31439.1|  577|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U41271-2|AAA82444.3|  713|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 41   PRAPSTGDHPVLPSIIDDIKLNPHTRYARSLSTPNKYHGGSHTISKSSQSTGPTHPGYN 217
            P +P+ G  PV PS          T  + S ++P+ Y   S + S +S S  PT P Y+
Sbjct: 1598 PTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYS 1655


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 41   PRAPSTGDHPVLPSIIDDIKLNPHTRYARSLSTPNKYHGGSHTISKSSQSTGPTHPGYN 217
            P +P+ G  PV PS          T  + S ++P+ Y   S + S +S S  PT P Y+
Sbjct: 1605 PTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYS 1662


>U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of clr
           protein 1 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 92  DIKLNPHTRYARSLSTPNKYHGGSHTISKSSQSTGPTHPGYN 217
           D+ +    +YA ++    +YH   H  S  S ++ P++P YN
Sbjct: 162 DMSIIEQQQYAENIPESKQYHRMHHFKSVISHNSLPSNPNYN 203


>AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrate
           adaptor proteinSOC-1 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 92  DIKLNPHTRYARSLSTPNKYHGGSHTISKSSQSTGPTHPGYN 217
           D+ +    +YA ++    +YH   H  S  S ++ P++P YN
Sbjct: 162 DMSIIEQQQYAENIPESKQYHRMHHFKSVISHNSLPSNPNYN 203


>AF014940-1|AAB63933.1|  143|Caenorhabditis elegans Hypothetical
           protein W02D7.3 protein.
          Length = 143

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 110 HTRYARSLSTPNKYHGGSHTISKSSQSTGPTHPGYNRRH 226
           HT YA+  S P  Y   S   S SS +T PT    +RR+
Sbjct: 70  HTNYAKRHSPPPSYSSRSKQSSVSSSAT-PTKSAVSRRN 107


>Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical protein
            C05D12.2 protein.
          Length = 1052

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 326  GCSLDEFGRCSCYH*TSKGFHHDAYCYANRNYVHDVC 216
            G ++D+FGRC C    +  +  D  C+    Y   +C
Sbjct: 960  GGNVDKFGRCICPSRYTGDYCWDRICHPPATYSFGIC 996


>U41271-3|AAP31439.1|  577|Caenorhabditis elegans Hypothetical
           protein C46H3.2b protein.
          Length = 577

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 98  KLNPHTRYARSLSTPNKYHGGSHTISKSSQSTGPTHPGYN 217
           KL  H R+A +   P+ Y   S+T S +S  + P   GY+
Sbjct: 327 KLKDHQRHASNSLHPSHYAVHSNTSSYNSSYSSPQSFGYS 366


>U41271-2|AAA82444.3|  713|Caenorhabditis elegans Hypothetical
           protein C46H3.2a protein.
          Length = 713

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 98  KLNPHTRYARSLSTPNKYHGGSHTISKSSQSTGPTHPGYN 217
           KL  H R+A +   P+ Y   S+T S +S  + P   GY+
Sbjct: 463 KLKDHQRHASNSLHPSHYAVHSNTSSYNSSYSSPQSFGYS 502


>U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical
           protein K02G10.5 protein.
          Length = 655

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -3

Query: 477 LTILILPYMLYITKITKIK 421
           +T++++P  LY TK+ K+K
Sbjct: 99  VTVMLIPLALYATKVNKVK 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,328,177
Number of Sequences: 27780
Number of extensions: 203636
Number of successful extensions: 503
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)