Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K24
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40970.1 68415.m05060 myb family transcription factor contain...    28   4.0  
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea...    27   5.3  
At1g65270.3 68414.m07401 expressed protein                             27   5.3  
At1g65270.2 68414.m07400 expressed protein                             27   5.3  
At1g65270.1 68414.m07399 expressed protein                             27   5.3  
At1g31630.1 68414.m03884 MADS-box family protein similar to MADS...    27   5.3  
At5g51290.1 68418.m06358 ceramide kinase-related contains weak s...    27   7.0  
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ...    27   7.0  
At1g43780.1 68414.m05043 serine carboxypeptidase S10 family prot...    27   9.3  
At1g02080.1 68414.m00130 transcriptional regulator-related conta...    27   9.3  

>At2g40970.1 68415.m05060 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 248

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = +2

Query: 2   DDEPLWLFKDNNEPRAPSTGDHPVLPSIIDDIKLNPHTRYARSLSTPNKYHGGSHTIS-- 175
           +D P W  +   E  +P      ++P  I    + PH   A  + +PN + G   T +  
Sbjct: 3   EDNPNWFLRWEEELPSPEE----LIP--ISQTLITPHLALAFQIGSPNHHLGSKRTTAIY 56

Query: 176 --KSSQSTGPTHP 208
             K   ST PT P
Sbjct: 57  HQKLQSSTTPTTP 69


>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
           family protein contains similarity to regulatory protein
           Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
           (6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
          Length = 781

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +2

Query: 29  DNNEPRAPSTGDHPVLPSIIDDIKLNPH-TR----YARSLSTPNKYHGGS 163
           DNN P +P        P  ID ++L+P+ TR    YA  +ST + +  G+
Sbjct: 595 DNNLPSSPLFTKGITAPGNIDSLRLSPNFTRRFSTYAERISTTSSFSDGA 644


>At1g65270.3 68414.m07401 expressed protein
          Length = 292

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 116 RYARSLSTPNKYHGGSHTISKSSQSTGPT 202
           +Y R L  P K+   SHTI KSS+    T
Sbjct: 193 QYPRQLKLPAKWSFNSHTILKSSEQAPRT 221


>At1g65270.2 68414.m07400 expressed protein
          Length = 292

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 116 RYARSLSTPNKYHGGSHTISKSSQSTGPT 202
           +Y R L  P K+   SHTI KSS+    T
Sbjct: 193 QYPRQLKLPAKWSFNSHTILKSSEQAPRT 221


>At1g65270.1 68414.m07399 expressed protein
          Length = 292

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 116 RYARSLSTPNKYHGGSHTISKSSQSTGPT 202
           +Y R L  P K+   SHTI KSS+    T
Sbjct: 193 QYPRQLKLPAKWSFNSHTILKSSEQAPRT 221


>At1g31630.1 68414.m03884 MADS-box family protein similar to
           MADS-box protein NMH 7 GI:2827300 from [Medicago sativa]
          Length = 339

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 23  FKDNNEPRAPSTGDHPVLPSIIDDIKLNPHTRY 121
           F DN + +AP   +H +   I D++ L+P+ +Y
Sbjct: 239 FSDNIQYQAPVDFNHQIQHGIYDNLSLDPNHQY 271


>At5g51290.1 68418.m06358 ceramide kinase-related contains weak
           similarity to ceramide kinases (GI:21624342) [Mus
           musculus]
          Length = 608

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 167 YDYLHGICLEYSNCERTSCEGSV*C 93
           +D L   CL+ S+CE T+C G + C
Sbjct: 40  HDGLSWKCLDSSDCEGTTCLGIIIC 64


>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
            subunit (RPB205) (RPII) (RPB1) nearly identical to
            P|P18616 DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6) {Arabidopsis thaliana}
          Length = 1840

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +2

Query: 41   PRAPSTGDHPVLPSII-DDIKLNPHTRYARS---LSTPNKYHGGSHTISKSSQSTGPTHP 208
            P +PS G  P  PS      K +P   Y+ S   LS  + Y   S   S +S S  PT P
Sbjct: 1715 PTSPSYG--PTSPSYNPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSYSPTSP 1772

Query: 209  GYN 217
             Y+
Sbjct: 1773 SYS 1775



 Score = 26.6 bits (56), Expect = 9.3
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = +2

Query: 41   PRAPSTGDHPVLPSIIDDIKLNPHTRYARSLSTPNKYHGGSHTISKSSQSTGPTHPGYN 217
            P +PS    P  PS          T  A S ++P  Y   S + S +S S GPT P YN
Sbjct: 1673 PTSPSYS--PTSPSYSPTSPSYSPTSPAYSPTSPG-YSPTSPSYSPTSPSYGPTSPSYN 1728


>At1g43780.1 68414.m05043 serine carboxypeptidase S10 family protein
           similar to serine carboxylase II-3 GB:CAA55478 GI:474392
           from [Hordeum vulgare]
          Length = 479

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = +2

Query: 11  PLWLFKDNNEPRAPSTGDHPVLPSIIDDIKLNPHTRY 121
           P+W+F  + +   P  G   ++  + DD+  N    Y
Sbjct: 380 PVWVFSGDEDSVIPLLGSRTLVKELADDLNFNTTVPY 416


>At1g02080.1 68414.m00130 transcriptional regulator-related contains
           Pfam PF04054: CCR4-Not complex component, Not1; contains
           TIGRFAM TIGR01612: reticulocyte binding protein; similar
           to General negative regulator of transcription subunit 1
           (SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
           gb|T44328 and gb|AA395265
          Length = 2378

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +2

Query: 11  PLWLFKDNNEPRAPSTGDHPVLPSIID---DIKLNP 109
           PL L + N  P  PS    P+LPS+     D+ +NP
Sbjct: 860 PLQLQQKNEVPSVPSNEAKPLLPSLSTTSVDVSVNP 895


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,510,404
Number of Sequences: 28952
Number of extensions: 177313
Number of successful extensions: 421
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)