Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K22
         (282 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    26   0.89 
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    24   3.6  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        23   8.3  

>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 0.89
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 168 ESLTPYLRSSVGGSDVSSLAFLGSSVGLIACRSVDRW 278
           E++  +  S  G   VS +    S V  I C  +D+W
Sbjct: 263 ENIDAFTESPCGNCPVSDICDANSRVNPITCEYLDKW 299


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 165  VESLTPYLRSSVGGSDVSSLAFLGSSVGLIAC 260
            +E    YL+     + +SSL F+   + L+ C
Sbjct: 1081 IEVRVDYLKDPKSSNGISSLDFVAEQISLLRC 1112


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -3

Query: 271 STERQAISPTEEPKKANEDTSDPPTLLRRYGVN 173
           ++  + ++PT   K++  D + P T++   G+N
Sbjct: 229 TSNNENLNPTSNTKQSVGDNTSPQTVIDTEGLN 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,067,984
Number of Sequences: 5004
Number of extensions: 18804
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)