Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K22
         (282 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0176 - 18957676-18958067,18958139-18958242,18958358-189584...    28   1.3  
04_04_0480 - 25537068-25537221,25537359-25537484,25537593-255376...    27   1.7  
05_04_0055 + 17536241-17536729,17537297-17537401                       26   3.9  
03_02_0880 - 12103703-12103726,12103938-12104210,12104389-121049...    26   3.9  
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701...    25   6.8  
11_03_0034 - 9124414-9124599,9124677-9124769,9125022-9125098,912...    25   9.0  
06_01_0213 + 1628974-1629339,1629441-1629590,1630935-1631095,163...    25   9.0  
04_04_0479 - 25524753-25525426,25525736-25525819,25526255-255264...    25   9.0  

>01_05_0176 -
           18957676-18958067,18958139-18958242,18958358-18958483,
           18959495-18959628,18959757-18959894,18960835-18960964,
           18961316-18961357,18964741-18965024
          Length = 449

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = -1

Query: 276 SDRQNDRRSAQQRNPRRPTRIH 211
           +++Q++ R+ Q+R  R+P+RIH
Sbjct: 399 AEQQDEERARQKREDRKPSRIH 420


>04_04_0480 -
           25537068-25537221,25537359-25537484,25537593-25537687,
           25537791-25537876,25538128-25538277,25538379-25538502
          Length = 244

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 190 VVVSVDLMYPRWPSWVPLL 246
           + ++V L YP  PSW+P L
Sbjct: 108 IAINVGLSYPTLPSWIPSL 126


>05_04_0055 + 17536241-17536729,17537297-17537401
          Length = 197

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 189 RSSVGGSDVSSLAFLGSSVGLIACRSVDR 275
           R++VGG   SS A   S  G+ A  +VDR
Sbjct: 32  RAAVGGEQQSSAAAASSGDGVAAAANVDR 60


>03_02_0880 -
           12103703-12103726,12103938-12104210,12104389-12104931,
           12105017-12105374,12105696-12105994,12106116-12106189,
           12106630-12106717,12107573-12107674,12107813-12107841,
           12108118-12108235
          Length = 635

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 280 VQRSTERQAISPTEEPKKANEDTSDPPTLLRRYGVNDSTIHD*SPN 143
           ++RS     + P E+   AN +T D P ++ R G+N     D  P+
Sbjct: 61  LERSGGVTVVKP-EDGSGANAETKDTPEMIHRGGINSHHHSDNVPS 105


>01_06_0734 +
           31569017-31569358,31569832-31569906,31570009-31570159,
           31570716-31570784,31570864-31571036,31571474-31571611,
           31571747-31571872,31571951-31572049,31573175-31573298,
           31573465-31573528,31573798-31573852,31573951-31574075,
           31574228-31574301,31574436-31574485,31574722-31574808,
           31574897-31574947,31575025-31575108,31575400-31575498
          Length = 661

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 208 DPPTLLRRYGVNDSTI 161
           DPPT+   +GVNDS +
Sbjct: 369 DPPTISMTFGVNDSPL 384


>11_03_0034 -
           9124414-9124599,9124677-9124769,9125022-9125098,
           9125725-9126401,9126423-9126653,9127760-9127826,
           9127843-9127993
          Length = 493

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -3

Query: 247 PTEEPKKANEDTSDPPTLLRRYGVNDSTIHD*SPNVSIVI 128
           P   PKK   D +D P + +   V D  +   +P V + I
Sbjct: 195 PRNSPKKQVNDKADKPEMPKEISVPDVPMESAAPEVPMEI 234


>06_01_0213 +
           1628974-1629339,1629441-1629590,1630935-1631095,
           1631178-1631892,1632045-1632091,1632295-1632316
          Length = 486

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 233 GFLCWADRLSFCRS 274
           GF CWAD   F RS
Sbjct: 433 GFYCWADMSKFIRS 446


>04_04_0479 -
           25524753-25525426,25525736-25525819,25526255-25526483,
           25526910-25527357,25528462-25528569,25528681-25528806,
           25528887-25528981,25529062-25529147,25529253-25529408,
           25529523-25529766
          Length = 749

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 190 VVVSVDLMYPRWPSWVP 240
           +VV+V + YP  P W+P
Sbjct: 150 LVVNVSMSYPTLPGWLP 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,559,810
Number of Sequences: 37544
Number of extensions: 108332
Number of successful extensions: 315
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)