Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K22
         (282 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82265-6|CAB05170.2|  537|Caenorhabditis elegans Hypothetical pr...    28   0.90 
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    27   2.7  
AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical...    26   4.8  
U53334-1|AAA96168.1|  508|Caenorhabditis elegans Hypothetical pr...    25   8.4  

>Z82265-6|CAB05170.2|  537|Caenorhabditis elegans Hypothetical
           protein F02H6.1 protein.
          Length = 537

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -3

Query: 271 STERQAISPTEEPKKANEDTSDPPTLLRRYGVNDSTIHD 155
           S   Q  S T EP   NE+  DP    R+ G N S + D
Sbjct: 495 SATNQPSSSTSEPNAGNEEVEDPSQRTRKRG-NGSELSD 532


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -1

Query: 273 DRQNDRRSAQQRNPRRP 223
           DR++DRR +++R+PR P
Sbjct: 888 DRRDDRRESRRRSPRSP 904


>AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical
           protein Y48B6A.11 protein.
          Length = 922

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 252 SAQQRNPRRPTRIHQIHRHYY 190
           SAQ RNPR   +  +I +HY+
Sbjct: 183 SAQYRNPRPDLKGSEIEKHYF 203


>U53334-1|AAA96168.1|  508|Caenorhabditis elegans Hypothetical
           protein R105.1 protein.
          Length = 508

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 119 NL*DYDRDIWRLVMYC 166
           N   YD DIWR + +C
Sbjct: 81  NFYPYDNDIWRKIQWC 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,810,780
Number of Sequences: 27780
Number of extensions: 102133
Number of successful extensions: 329
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)