Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K22
         (282 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07260.1 68418.m00828 homeobox protein-related contains weak ...    27   2.6  
At3g51510.1 68416.m05641 expressed protein                             26   3.4  
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea...    26   4.5  
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea...    26   4.5  
At5g16120.1 68418.m01883 hydrolase, alpha/beta fold family prote...    25   5.9  
At4g28550.1 68417.m04084 RabGAP/TBC domain-containing protein si...    25   5.9  
At4g26170.1 68417.m03766 expressed protein                             25   5.9  
At2g31060.1 68415.m03790 elongation factor family protein contai...    25   5.9  
At3g09230.1 68416.m01097 myb family transcription factor identic...    25   7.8  
At3g08010.1 68416.m00978 expressed protein                             25   7.8  
At2g46830.2 68415.m05844 myb-related transcription factor (CCA1)...    25   7.8  
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)...    25   7.8  

>At5g07260.1 68418.m00828 homeobox protein-related contains weak
           similarity to Homeobox protein FWA (Swiss-Prot:Q9FVI6)
           [Arabidopsis thaliana]
          Length = 541

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 180 PYLRSSVGGSDVSSLAFLGSSVGLIACRS 266
           PY  +++ G D+S +  L S   +I C S
Sbjct: 466 PYFAAAINGGDLSGVELLPSGFTIIPCES 494


>At3g51510.1 68416.m05641 expressed protein
          Length = 181

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 280 VQRSTERQAISPTEEPKKANEDTSDPPTLLRRYG 179
           V  +TE    S   EP  AN D+ +PP   R  G
Sbjct: 57  VTAATEGSKKSKESEPSWANPDSDEPPPWARNEG 90


>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to uncharacterized KIAA1449 protein
           (gi:7959157) [Homo sapiens]
          Length = 753

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = -3

Query: 256 AISPTEEPKKANEDTSD-----PPTLLRRYGVNDSTIHD*SPN 143
           A+SP  +P  ANED+S      P T LR  G +++     SP+
Sbjct: 159 ALSPVTKPNDANEDSSSNGANGPVTSLRTVGSSNNISVQSSPS 201


>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to uncharacterized KIAA1449 protein
           (gi:7959157) [Homo sapiens]
          Length = 753

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = -3

Query: 256 AISPTEEPKKANEDTSD-----PPTLLRRYGVNDSTIHD*SPN 143
           A+SP  +P  ANED+S      P T LR  G +++     SP+
Sbjct: 159 ALSPVTKPNDANEDSSSNGANGPVTSLRTVGSSNNISVQSSPS 201


>At5g16120.1 68418.m01883 hydrolase, alpha/beta fold family protein
           similar to monoglyceride lipase from [Homo sapiens]
           GI:14594904, [Mus musculus] GI:2632162; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 351

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 254 DQPNRGTQEGQRGYIRSTDTTTQVRSQRFNN 162
           D P  G  EG  GYI S D   Q   + ++N
Sbjct: 116 DYPGFGLSEGLHGYIPSFDLLVQDVIEHYSN 146


>At4g28550.1 68417.m04084 RabGAP/TBC domain-containing protein
           similar to SP|P09379 GTPase-activating protein GYP7
           (Fragment) {Yarrowia lipolytica}; contains Pfam profile
           PF00566: TBC domain
          Length = 424

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 241 EEPKKANEDTSDPPTLLRRYG 179
           EEP+  N  +   P LL++YG
Sbjct: 325 EEPQNMNNSSGQDPRLLKQYG 345


>At4g26170.1 68417.m03766 expressed protein
          Length = 139

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 253 ISPTEEPKKANEDTSDPPT 197
           ++PTE  K  NED S P T
Sbjct: 30  LNPTERDKAVNEDKSKPET 48


>At2g31060.1 68415.m03790 elongation factor family protein contains
           Pfam profiles: PF00009 elongation factor Tu GTP binding
           domain, PF00679 elongation factor G C-terminus, PF03144
           elongation factor Tu domain 2
          Length = 527

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 208 DPPTLLRRYGVNDSTI 161
           DPPT+   +GVNDS +
Sbjct: 224 DPPTISMTFGVNDSPL 239


>At3g09230.1 68416.m01097 myb family transcription factor identical
           to transforming protein (myb) homolog GB:S22520
           [Arabidopsis thaliana]
          Length = 393

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 268 TERQAISPTEEPKKANEDTSDPPTLLR 188
           +E Q +  T     + +D  DPPTL R
Sbjct: 217 SEEQCVEKTNGEGISRQDDKDPPTLFR 243


>At3g08010.1 68416.m00978 expressed protein
          Length = 374

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 280 VQRSTERQAISPTEEPKKANEDTSDPPT 197
           V RS    ++S T+E + ANE   D PT
Sbjct: 47  VSRSLPESSLSITKEQEVANEVEEDDPT 74


>At2g46830.2 68415.m05844 myb-related transcription factor (CCA1)
           identical to myb-related transcription factor (CCA1)
           GI:4090569 from [Arabidopsis thaliana]
          Length = 526

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 271 STERQAISPTEEPKKANEDTSDPPT 197
           ++ERQ      E K+ NEDT+ P T
Sbjct: 358 ASERQEDGTNGEVKETNEDTNKPQT 382


>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
           identical to myb-related transcription factor (CCA1)
           GI:4090569 from [Arabidopsis thaliana]
          Length = 608

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 271 STERQAISPTEEPKKANEDTSDPPT 197
           ++ERQ      E K+ NEDT+ P T
Sbjct: 440 ASERQEDGTNGEVKETNEDTNKPQT 464


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,438,786
Number of Sequences: 28952
Number of extensions: 92361
Number of successful extensions: 255
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 241748928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)