Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_K20
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465... 42 4e-04
11_04_0160 + 14247463-14247584,14247710-14247923,14250099-142502... 41 9e-04
06_03_0095 - 16575938-16576585,16577028-16577219,16577294-165773... 38 0.006
08_02_0501 + 17836948-17837373,17837857-17839184,17839270-178393... 36 0.018
05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,322... 35 0.043
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549... 35 0.043
06_03_0499 + 21461608-21463427,21463517-21463627,21463867-214641... 32 0.30
03_01_0426 + 3292358-3292780,3292858-3293094,3293166-3293759 31 0.52
02_05_0868 + 32342967-32343915,32344389-32344447 30 1.2
02_01_0035 - 220036-221419,222050-222801 30 1.2
09_03_0087 - 12237226-12237346,12237423-12237555,12237641-122377... 29 3.7
07_03_1525 + 27448257-27448582,27450741-27450973,27451280-274529... 29 3.7
12_01_1007 - 10208034-10208165,10208376-10208480,10208612-102086... 27 8.5
12_01_0592 + 4848467-4849164,4849413-4849491 27 8.5
08_02_0051 + 11683636-11684046 27 8.5
06_03_0587 + 22555414-22557231 27 8.5
03_05_0509 - 25032494-25033156 27 8.5
01_06_1016 + 33830751-33831387,33831470-33831527,33831620-338317... 27 8.5
01_06_0388 + 28927211-28928467 27 8.5
>03_02_0913 + 12344096-12344125,12344284-12345970,12346243-12346573,
12346712-12347567,12347760-12347883,12348469-12348688,
12348771-12349229,12349318-12349519
Length = 1302
Score = 41.9 bits (94), Expect = 4e-04
Identities = 15/77 (19%), Positives = 40/77 (51%)
Frame = +1
Query: 10 VATILIIDNTTQIALDTTYWTVFNHVTIWGSLVSYFVLDYFYNYVIGGPYVGSLTVALTQ 189
+A +++++ +A+D W + H+ +WGS+ + F+ + + P G++
Sbjct: 1187 IAVVILVN--IHLAMDIQRWVLITHLAVWGSIAATFLCMVLIDSIPIFPNYGTIYNMAAS 1244
Query: 190 ATFWFTAVLTVIILMVP 240
T+W + L +++ ++P
Sbjct: 1245 RTYWLSVCLIIVLGLLP 1261
>11_04_0160 + 14247463-14247584,14247710-14247923,14250099-14250215,
14251578-14251670,14251748-14251922,14252981-14253017,
14253842-14253875,14254212-14254481,14255768-14255872,
14256295-14256392,14256474-14256616,14257197-14257290,
14257378-14257487,14258018-14258172,14258252-14258332,
14258415-14258535,14259358-14259464,14259537-14259668,
14261105-14261258,14264094-14264211,14264344-14264517,
14264831-14264882,14265450-14265577,14265670-14265820,
14265904-14266242
Length = 1107
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Frame = +1
Query: 46 IALDTTYWTVFNHVTIWGSLVSYFVLDYFYNYVIGGPYVGSLTVALT---QATFWFTAVL 216
+ L+ +T + IWG+ ++++++++F + + P G T+ Q T+W T +L
Sbjct: 940 VTLEMNSFTFVQFLAIWGNFIAFYIINFFISSI---PSAGMYTIMFRLCRQPTYWVTLLL 996
Query: 217 TVIILMVPVVSWRLARSRRRPT 282
+ M PV++ + R RP+
Sbjct: 997 ISGVGMGPVLALKYFRYTYRPS 1018
>06_03_0095 - 16575938-16576585,16577028-16577219,16577294-16577392,
16577496-16577618,16577717-16577929,16578143-16578251,
16578339-16578427,16578604-16578880,16578974-16579084,
16579160-16580508,16581218-16581631
Length = 1207
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +1
Query: 1 GTVVATILIIDNTTQIALDTTYWTVFNHVTIWGSLVSYFVLDYFYNYV----IGGPYVGS 168
G ++ T ++ Q+AL Y+T+ H+ IWGS+ +++ Y V Y+
Sbjct: 1051 GVLMYTCVVWVVNCQMALSVNYFTIIQHIFIWGSIAVWYLFLLAYGAVDPRFSKSAYMVF 1110
Query: 169 LTVALTQATFWFTAVLTVIILMVPVVSWRLARSRRRP 279
+ ++W + V+ ++P + + R P
Sbjct: 1111 IEQVAPALSYWLVTLFAVMATLIPYFCYAAIQIRFFP 1147
>08_02_0501 + 17836948-17837373,17837857-17839184,17839270-17839380,
17839719-17839998,17840275-17840396,17840451-17840556,
17840814-17841020,17841130-17841255,17841719-17841817,
17842265-17842456,17842555-17843073
Length = 1171
Score = 36.3 bits (80), Expect = 0.018
Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Frame = +1
Query: 1 GTVVATILIIDNTTQIALDTTYWTVFNHVTIWGSLVSYFVLDYFYN----YVIGGPYVGS 168
G + T ++ Q+AL +Y+T H IWGS++ ++ Y + Y
Sbjct: 1058 GVTMYTCVVWTVNCQLALYISYFTWIQHFVIWGSILIWYTFLVIYGSFPPTISTSAYHVF 1117
Query: 169 LTVALTQATFWFTAVLTVIILMVPVVSWRLARS 267
+ +W + ++ V+ ++P +++ +S
Sbjct: 1118 WEACASSPLYWLSTLVIVVTALIPYFLYKITQS 1150
>05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,
32233-33714
Length = 1189
Score = 35.1 bits (77), Expect = 0.043
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +1
Query: 1 GTVVATILIIDNTTQIALDTTYWTVFNHVTIWGSLVSYFVLDYFYNYV---IGGPYVGSL 171
GT ++ N Q+ + Y+T+ H IWGS+ ++V Y + Y
Sbjct: 1031 GTAYTCVVWAVNA-QMTVTANYFTLVQHACIWGSVALWYVFLLAYGAITPAFSTNYFMLF 1089
Query: 172 TVALTQA-TFWFTAVLTVIILMVPVVSWRLARSRRRP 279
T L A ++W +L ++P ++ A++R P
Sbjct: 1090 TDGLAAAPSYWVVTLLVPAAALLPYFTYSAAKTRFFP 1126
>03_02_0859 - 11853928-11854138,11854225-11854683,11854760-11854991,
11855064-11855187,11855276-11855960,11856429-11856735,
11856832-11858188
Length = 1124
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/77 (19%), Positives = 36/77 (46%)
Frame = +1
Query: 10 VATILIIDNTTQIALDTTYWTVFNHVTIWGSLVSYFVLDYFYNYVIGGPYVGSLTVALTQ 189
+A +++++ +A+D W H IWGS+V+ + + + P ++ +
Sbjct: 1006 LAVVILVN--IHLAIDVIRWNWITHAAIWGSIVATLICVMVIDSIPILPGFWAIYKVMGT 1063
Query: 190 ATFWFTAVLTVIILMVP 240
FW + +++ M+P
Sbjct: 1064 GLFWALLLAVIVVGMIP 1080
>06_03_0499 + 21461608-21463427,21463517-21463627,21463867-21464143,
21464265-21464353,21464508-21464595,21464698-21464907,
21464985-21465110,21465429-21465620,21466532-21467188
Length = 1189
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +1
Query: 1 GTVVATILIIDNTTQIALDTTYWTVFNHVTIWGSLVSYFVLDYFY 135
GT + T +I QIAL +++T H+ +WGS+ ++++ Y
Sbjct: 1030 GTTMFTCIIWAVNMQIALTMSHFTWIQHLFVWGSVGTWYLFIIVY 1074
>03_01_0426 + 3292358-3292780,3292858-3293094,3293166-3293759
Length = 417
Score = 31.5 bits (68), Expect = 0.52
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Frame = -3
Query: 276 PPARPRQSPRHNRHHQDYHSEYGCEPECSLRE---GDGERPDVGAAY 145
P RP P+H RH + Y + CE + E G GE G Y
Sbjct: 203 PRPRPPSPPQHPRHRRSYEMDRSCEENAKIVEVDSGAGEPARRGGEY 249
>02_05_0868 + 32342967-32343915,32344389-32344447
Length = 335
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/47 (42%), Positives = 20/47 (42%)
Frame = -3
Query: 291 LRECGPPARPRQSPRHNRHHQDYHSEYGCEPECSLREGDGERPDVGA 151
L E PP RP P H Q YH Y P L G GE P V A
Sbjct: 49 LHEIDPPPRPAPPPPH-FFPQPYHPHYDGHPRRWLIYG-GEAPPVAA 93
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 276 PPARPRQSPRHNRHHQDYHSEYGCEPECSLREGDG 172
PP R +P+H+ HH +H G + E ++ E G
Sbjct: 124 PPPPARWAPQHHHHHHPHH-HLGLDVEAAVPESSG 157
>09_03_0087 -
12237226-12237346,12237423-12237555,12237641-12237730,
12238992-12239198,12239738-12239813,12240019-12240148,
12241024-12241121
Length = 284
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 276 PPARPRQSPRHNRHHQDYHSEYGCEPECSLRE 181
PP RPR P + H + Y SE G + +R+
Sbjct: 28 PPCRPRVFPARSNHSRGYSSEGGSKYNRPMRQ 59
>07_03_1525 +
27448257-27448582,27450741-27450973,27451280-27452919,
27453129-27453575
Length = 881
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +1
Query: 199 WFTAVLTVIILMVPVVSWRLARSRRRPT 282
W +L++++++VP+ +L R+ RRPT
Sbjct: 159 WAHNLLSILLILVPLAIGQLLRAARRPT 186
>12_01_1007 -
10208034-10208165,10208376-10208480,10208612-10208673,
10210820-10211456
Length = 311
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -1
Query: 545 GARREGDGGGVLGRA 501
G R+GDGGGV GRA
Sbjct: 167 GGGRDGDGGGVRGRA 181
>12_01_0592 + 4848467-4849164,4849413-4849491
Length = 258
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -3
Query: 294 PLRECGPPARPRQSPRHNRHHQDYHSE 214
P E GP ARPR +P H HQ SE
Sbjct: 30 PHAELGPIARPRDAP-HRHGHQRTSSE 55
>08_02_0051 + 11683636-11684046
Length = 136
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1
Query: 572 RSSASSVWVGARREGDGGG 516
RSSA++ +GAR GDGGG
Sbjct: 43 RSSAATASMGARPGGDGGG 61
>06_03_0587 + 22555414-22557231
Length = 605
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 1 GTVVATILIIDNTTQIALDTTYWTVFNHVTIWGSLVSYFVLDYFYNYVIGG--PYVGSLT 174
G++ +++L + ++ L +T H+ +GSL + +LD YN + G +V SLT
Sbjct: 381 GSIPSSLLNASHLQRLFLTNNSFT--GHIPFFGSLQNLEILDMAYNMLEAGDWSFVSSLT 438
>03_05_0509 - 25032494-25033156
Length = 220
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Frame = -3
Query: 246 HNRHHQDYHSEYGCEPE----CSLREGDGERPD 160
H+ HH+ + SE C P + R GD PD
Sbjct: 19 HHHHHRRHRSETSCPPTSVAVAAARAGDAHAPD 51
>01_06_1016 +
33830751-33831387,33831470-33831527,33831620-33831703,
33831819-33831954,33833191-33833451
Length = 391
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -2
Query: 592 PSPSRVTGRARRVSGWALAGRVTAAA 515
P+P+ V+ +A RVSG +A TAAA
Sbjct: 83 PTPASVSAKATRVSGAKVAAARTAAA 108
>01_06_0388 + 28927211-28928467
Length = 418
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 248 DTTGTIRIITVSTAVNQNVACVRATVSDP 162
D GT+R+ITV++ Q V C+ ++DP
Sbjct: 370 DPEGTVRLITVASIGQQEVFCL-GLINDP 397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,531,835
Number of Sequences: 37544
Number of extensions: 205472
Number of successful extensions: 999
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -