Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K20
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)              72   3e-13
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)             44   7e-05
SB_34603| Best HMM Match : DUF1211 (HMM E-Value=3.3)                   44   7e-05
SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)                 29   2.1  
SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13)                 28   4.9  
SB_34340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_33520| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-09)                 27   8.6  

>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 44/158 (27%), Positives = 64/158 (40%), Gaps = 10/158 (6%)
 Frame = +1

Query: 1    GTVVATILIIDNTTQIALDTTYWTVFNHVTIWGSLVSYFVLDYFYN---YVIGGP---YV 162
            GT VA  L++    +I+L T YWT  NH   WGS++ YF+  + Y    +   GP   Y 
Sbjct: 912  GTAVAATLVVVVNVEISLKTQYWTWINHFFTWGSIIFYFIFYFIYYSQFFFNRGPQEHYF 971

Query: 163  GSLTVALTQATFWFTAVLTVIILMVPVVSWRLARSRRRPTLXXXXXXXXXXXXXXXXXXX 342
            G          FW   ++   +  +P +  +L RS  +PTL                   
Sbjct: 972  GVQFQVFGNPVFWLYLLIAAFVTNIPSICEKLIRSEYKPTLSDAVRRKQQGRERTVLKLR 1031

Query: 343  X---XXXXXXXXXXXGYAFAHQEGFGRLITS-GKIMRR 444
                            YAF+HQEGFG ++ S    +RR
Sbjct: 1032 EFRPRLTRRRSSKRTSYAFSHQEGFGSIVMSPASFLRR 1069


>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
          Length = 1459

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = +1

Query: 1    GTVVATILIIDNTTQIALDTTYWTVFNHVTIWGSLVSYFVLDYFYN 138
            GT V  + +I +  ++AL T YWT   HV  WGS++++F+    +N
Sbjct: 1348 GTFVFAVCVIVSNLKLALVTHYWTWLTHVVTWGSILTFFLFAIVFN 1393


>SB_34603| Best HMM Match : DUF1211 (HMM E-Value=3.3)
          Length = 143

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = +1

Query: 1   GTVVATILIIDNTTQIALDTTYWTVFNHVTIWGSLVSYFVLDYFYN 138
           GT V  + +I +  ++AL T YWT   HV  WGS++++F+    +N
Sbjct: 32  GTFVFAVCVIVSNLKLALVTHYWTWLTHVVTWGSILTFFLFAIVFN 77


>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
          Length = 506

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 208 AVLTVIILMVP-VVSWRLARSRRRP 279
           AV+TVI L  P  +SWR  R RRRP
Sbjct: 61  AVVTVIALATPGCLSWRRRRRRRRP 85


>SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13)
          Length = 1052

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 72  CPIRCVQCYLCCIIYDEYGGDY 7
           C ++CV  Y CC  Y EY   Y
Sbjct: 227 CDLQCVYFYDCCADYHEYCSSY 248


>SB_34340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -1

Query: 125 SSTKYDTNEPHIVT*LNTVQYVVSSAICVVLSMMSMVAT 9
           SS +Y  +    V  +++ QYVVSSA CVV S   +V++
Sbjct: 146 SSAQYVVSSAQCV--VSSAQYVVSSAQCVVSSAQCVVSS 182



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -1

Query: 125 SSTKYDTNEPHIVT*LNTVQYVVSSAICVVLSMMSMVAT 9
           SS +Y  +    V  +++ QYVVSSA CVV S   +V++
Sbjct: 132 SSAQYVVSSAQCV--VSSAQYVVSSAQCVVSSAQYVVSS 168



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 80  LNTVQYVVSSAICVVLSMMSMVATT 6
           ++  QYVVSSA CVV S   + A+T
Sbjct: 348 VSNAQYVVSSAQCVVSSAQYVAAST 372


>SB_33520| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-09)
          Length = 317

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +1

Query: 67  WTVFNHVTIWGSLVSYFVLDYFYNYVIGGPYVGSLTVALTQATFWFTAVLTVIILMVPVV 246
           W+V N +++ GSL S+ V+     Y I  P+      A         + L  I+L +P++
Sbjct: 86  WSVANGISVDGSLFSFTVIAIERTYAIFAPFKHRQLTAKHYTLAISMSWLLSILLEIPIM 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,071,119
Number of Sequences: 59808
Number of extensions: 220985
Number of successful extensions: 2305
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2297
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)