Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_K20
(593 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer... 68 4e-12
AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer ... 68 4e-12
Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical pr... 33 0.15
U23179-5|AAK68210.2| 347|Caenorhabditis elegans Serpentine rece... 29 3.3
AF016688-1|AAB66077.3| 700|Caenorhabditis elegans Hypothetical ... 29 3.3
CU457741-7|CAM36348.1| 710|Caenorhabditis elegans Hypothetical ... 28 4.4
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am... 27 7.6
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am... 27 7.6
U00047-2|AAA50688.2| 275|Caenorhabditis elegans Abnormal cell l... 27 7.6
AF039712-3|AAK21400.3| 393|Caenorhabditis elegans Hypothetical ... 27 7.6
>AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 2, isoform b protein.
Length = 1051
Score = 68.1 bits (159), Expect = 4e-12
Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Frame = +1
Query: 16 TILIIDNTTQIALDTTYWTVFNHVTIWGSLVSYFVLDYF------YNYVIGGPYVGSLTV 177
T L++ T QIA DT+YWT +H IWGSLV YF++ + ++++ S V
Sbjct: 777 TALVVVVTGQIAFDTSYWTAISHFVIWGSLVLYFLVCFLLYEWLPVSWIVKTSSSISYGV 836
Query: 178 AL-TQAT--FWFTAVLTVIILMVPVVSWRLARSRRRPTLXXXXX---------XXXXXXX 321
A T T FWF+ ++ ++L++PV+ R P+
Sbjct: 837 AFRTMVTPHFWFSILMVSVVLLLPVMLNRFFWLDTHPSFADRLRIRKKMGKKPSAKDDKK 896
Query: 322 XXXXXXXXXXXXXXXXXXXGYAFAHQEGFGRLITSGKIMRRI 447
GYAF+H +GFG LI GK+ + +
Sbjct: 897 TAFKRTAATRRSVRGSLRSGYAFSHSQGFGELILKGKLFKNV 938
>AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 2, isoform a protein.
Length = 1222
Score = 68.1 bits (159), Expect = 4e-12
Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Frame = +1
Query: 16 TILIIDNTTQIALDTTYWTVFNHVTIWGSLVSYFVLDYF------YNYVIGGPYVGSLTV 177
T L++ T QIA DT+YWT +H IWGSLV YF++ + ++++ S V
Sbjct: 948 TALVVVVTGQIAFDTSYWTAISHFVIWGSLVLYFLVCFLLYEWLPVSWIVKTSSSISYGV 1007
Query: 178 AL-TQAT--FWFTAVLTVIILMVPVVSWRLARSRRRPTLXXXXX---------XXXXXXX 321
A T T FWF+ ++ ++L++PV+ R P+
Sbjct: 1008 AFRTMVTPHFWFSILMVSVVLLLPVMLNRFFWLDTHPSFADRLRIRKKMGKKPSAKDDKK 1067
Query: 322 XXXXXXXXXXXXXXXXXXXGYAFAHQEGFGRLITSGKIMRRI 447
GYAF+H +GFG LI GK+ + +
Sbjct: 1068 TAFKRTAATRRSVRGSLRSGYAFSHSQGFGELILKGKLFKNV 1109
>Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical protein
W09D10.2 protein.
Length = 1335
Score = 33.1 bits (72), Expect = 0.15
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Frame = +1
Query: 1 GTVVATILIIDNTTQIALDTTYWTVFNHVTIWGSLVSYFVLDYFYNYVIGG--------- 153
G ++ T LII NT +AL YWT +++ S++ +F+ YN +
Sbjct: 1178 GHLLVTQLIIVNTFHLALFVQYWTWPMFWSMFLSVLLFFICALLYNGFVTANWTWTNVKD 1237
Query: 154 -PYVGSLTVALTQATFWFTAVLTVIILMVP 240
P + SL + + FW +++V++ + P
Sbjct: 1238 PPSMVSLK-SFSSLEFWMALIISVVLCLTP 1266
>U23179-5|AAK68210.2| 347|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 2 protein.
Length = 347
Score = 28.7 bits (61), Expect = 3.3
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Frame = +1
Query: 19 ILIIDNTTQIALDTTYWTVFNHVTIWGSLVSYFVLDYFYNY----VIGGPYVGS---LTV 177
IL +N Q+A + TY V+ +W +VS + Y + ++ P+ G+ L V
Sbjct: 6 ILEYENECQLANEVTYHPVYRIAQLWTFVVSILAIPALYIFLMKRILPLPFHGNIKFLLV 65
Query: 178 ALTQATFWFTAVLTVIILMVPVVS 249
A+F F AVL + VV+
Sbjct: 66 CYFSASFVF-AVLLAFLFSYHVVA 88
>AF016688-1|AAB66077.3| 700|Caenorhabditis elegans Hypothetical
protein F18A12.5 protein.
Length = 700
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 1 GTVVATILIIDNTTQIALDTTYWTVFNHV 87
G++V + I TTQ+AL +T VFNHV
Sbjct: 278 GSIVENLGISSLTTQMALKSTGLDVFNHV 306
>CU457741-7|CAM36348.1| 710|Caenorhabditis elegans Hypothetical
protein C42C1.7 protein.
Length = 710
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 258 QSPRHNRHHQDYHSEYGCEPECSL 187
Q RH ++ +SEYGCEP +L
Sbjct: 506 QECRHRAYNVTMYSEYGCEPLAAL 529
>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 4, isoform a protein.
Length = 1212
Score = 27.5 bits (58), Expect = 7.6
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Frame = +1
Query: 1 GTVVATILIIDNTTQIALDTTYWTVFNHVTIWGSLVSYFVLDYFYN------YVIGGPYV 162
G +AT I+ N+ +AL YW + V ++ + + +F ++ P V
Sbjct: 1110 GFYIATSSILVNSGHLALQVRYWH-WQLVALFSFFILFNFAFFFAECLTAAAAMVPDPPV 1168
Query: 163 GSLTVALTQATFWFTAVLTVIILMVP 240
A+ FW+ +TVI+ + P
Sbjct: 1169 WMPIHAMGDPRFWYYQFITVIVALCP 1194
>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 4, isoform b protein.
Length = 1454
Score = 27.5 bits (58), Expect = 7.6
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Frame = +1
Query: 1 GTVVATILIIDNTTQIALDTTYWTVFNHVTIWGSLVSYFVLDYFYN------YVIGGPYV 162
G +AT I+ N+ +AL YW + V ++ + + +F ++ P V
Sbjct: 1110 GFYIATSSILVNSGHLALQVRYWH-WQLVALFSFFILFNFAFFFAECLTAAAAMVPDPPV 1168
Query: 163 GSLTVALTQATFWFTAVLTVIILMVP 240
A+ FW+ +TVI+ + P
Sbjct: 1169 WMPIHAMGDPRFWYYQFITVIVALCP 1194
>U00047-2|AAA50688.2| 275|Caenorhabditis elegans Abnormal cell
lineage protein 37 protein.
Length = 275
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 297 QPLRECGPPARPRQSPRH 244
+P R+ PP RPR+ PRH
Sbjct: 92 EPGRQGRPPGRPRKMPRH 109
>AF039712-3|AAK21400.3| 393|Caenorhabditis elegans Hypothetical
protein F54D7.2 protein.
Length = 393
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = +1
Query: 19 ILIIDNTTQIALDTTYWTVFNHVTI---WGSLVSYF--VLDYFYNYVIG 150
+L + +TQI TT+W +N + W VS F V+ Y + Y++G
Sbjct: 166 LLCVLISTQIVFFTTHWEKYNTGIMFLSWAYDVSQFGLVIVYLWTYIVG 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,856,651
Number of Sequences: 27780
Number of extensions: 150349
Number of successful extensions: 552
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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