Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K18
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   1.8  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   7.2  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   7.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.6  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 139 NLRFYIIQNWYSSKNILDRLGSQYPL 216
           N+  YI+   YSSKN+ +    +Y L
Sbjct: 196 NIETYIVNTNYSSKNMREYNDPEYKL 221


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 423 RDQSDEKRSEAMRAFSEHQYN 485
           RD+++ +RS+  +  S + YN
Sbjct: 290 RDRTERERSKETKIISSNNYN 310


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 423 RDQSDEKRSEAMRAFSEHQYN 485
           RD+++ +RS+  +  S + YN
Sbjct: 301 RDRTERERSKETKIISSNNYN 321


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 5   SVSNFLSFVCVLGLPVLNPYF 67
           ++SNFL   C+    V+N Y+
Sbjct: 95  AISNFLMMFCMSPPMVINCYY 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,654
Number of Sequences: 438
Number of extensions: 3044
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)