Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K17
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...   140   2e-34
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    30   0.25 
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    28   1.0  
SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein Bqt1|Sc...    27   3.1  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    27   3.1  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   3.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   4.1  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   5.4  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    26   5.4  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    26   5.4  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   7.2  

>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score =  140 bits (338), Expect = 2e-34
 Identities = 66/141 (46%), Positives = 87/141 (61%)
 Frame = +1

Query: 46  PGINIDHIVKERYPTFVXXXXXXXXXXXXXXXXSTFPSLKKVPRDQSLLCRRLTVEFMHA 225
           P  ++DHI+KERYPTF                 ST P   K+       C RL  EF H 
Sbjct: 111 PTYSLDHIIKERYPTFHDALKDIDDALSMLFLFSTMPVTDKIGAATVANCERLCAEFQHY 170

Query: 226 VIAAKALRKVFVSVKGFYYQVELEGQTITWIVPHHFSFQPQTKDEVDFKIMSTFVEFYTM 405
           VI + +LRK F+S+KG YYQ E+ G+ ITWIVP+ F+    T  +VDF+IM TF+EFY  
Sbjct: 171 VIRSNSLRKAFLSIKGIYYQAEIFGEQITWIVPYKFAQSVPT--DVDFRIMHTFLEFYQA 228

Query: 406 MLGFVNFKLYHSLNIVYPPKL 468
           ++GFVNFKLY++L + YPPK+
Sbjct: 229 LMGFVNFKLYNTLGLRYPPKI 249


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 124 GSHPSLLKHLQKWDIFLLQYDQCLFLGNHVKTFASVH 14
           G  P +L +L  W I+ + Y++C  L    K + S+H
Sbjct: 73  GVGPMMLGYLPSWSIYFVVYEKCKVLFGVNKKYTSLH 109


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 298 GQTITWIVPHHFSFQPQTKDEVDFKIMST 384
           G+ + W   ++   +P+  +E DFK+ ST
Sbjct: 117 GEMVKWFDSNYHFLRPEVSEETDFKLSST 145


>SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein
           Bqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 124 GSHPSLLKHLQKWDIFL 74
           GSH  L+K L+KW IF+
Sbjct: 114 GSHVPLVKRLEKWRIFV 130


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +1

Query: 502 LIDEHAYVAERIAAMNITLAKIDGANAVEEAPEIDVFHTED 624
           L + H  + + I++ N T + +  AN ++++P+I    T+D
Sbjct: 344 LSNRHILMRDLISSKNQTNSYLSAANRLQDSPKISKARTDD 384


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 361 VDFKIMSTFVEFYTMMLGFVNFKLYHSLNIVYPPKLPAGFSV 486
           V    ++ ++  Y    G V  +    L I+ PP LPA  SV
Sbjct: 405 VSIVFIAIYLNLYNASFGHVVLRSLDVLTILVPPALPATLSV 446


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 93  KSGISFFYNMINVYSWVIT*KLS--HLSIFSHS 1
           K G+S+F  +I  + W++  KLS    S + HS
Sbjct: 279 KKGLSYFKAVIRAFEWLVEQKLSKTRFSAWMHS 311


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 615 VKNVNLRSFFYSICSINFS*GDVHSCN 535
           VKN++L      IC++ F   D+ +CN
Sbjct: 845 VKNLSLLELALLICAVRFEARDIPACN 871


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -3

Query: 446 FSEWYNLKLTNPSIIV*NSTNVDIILKSTSSLVCGWNEK*CGTIHVMVCP 297
           F  +YN KLT PS+ +  +++  + L  +  LV    E+ C   HV++ P
Sbjct: 156 FDHFYNPKLTTPSLHIAGTSDTLVPLARSKQLV----ER-CENAHVLLHP 200


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 322 PHHFSFQPQTKDEVDFKIMSTFVEFY 399
           P H S +P  KD     I +TF+E Y
Sbjct: 206 PKHLSIRPNCKDNNTPSISNTFIEPY 231


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -3

Query: 182 WSRGTFFSDGK---VLNKKQRVRQSSKSLKASTKVGYL 78
           W+     SDG    V+   +  RQS  S KA TKVG L
Sbjct: 276 WANTVLASDGVYGVVVYTGKDTRQSMNSSKAKTKVGLL 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,765
Number of Sequences: 5004
Number of extensions: 49447
Number of successful extensions: 134
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)