Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_K17
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0803 + 27829438-27829461,27829558-27829643,27829960-278300... 128 3e-30
08_02_1543 + 27783063-27783182,27784321-27784485,27784577-277846... 30 1.8
09_02_0154 + 5055946-5058721,5058754-5058770 29 2.4
09_06_0252 + 21867179-21867283,21868362-21868526,21868621-218687... 29 4.2
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 5.6
03_02_0021 - 5049705-5049713,5049744-5049770,5049877-5049940,505... 28 7.4
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428... 27 9.8
>03_05_0803 +
27829438-27829461,27829558-27829643,27829960-27830088,
27830806-27830925,27831007-27831132,27831349-27831433,
27831538-27831648,27832215-27832308,27832448-27832728,
27832840-27832947,27833163-27833284,27833825-27834035,
27834149-27834376,27834591-27834680
Length = 604
Score = 128 bits (310), Expect = 3e-30
Identities = 62/149 (41%), Positives = 88/149 (59%), Gaps = 2/149 (1%)
Frame = +1
Query: 28 KFLRDYPGINIDHIVKERYPTFVXXXXXXXXXXXXXXXXSTFPSLK--KVPRDQSLLCRR 201
+ L P +D ++ ERYPTFV + P+++ +V + CRR
Sbjct: 103 RLLNRPPTYKLDRLILERYPTFVDALRDLDDCLTMVHLFAALPAVEGERVQVQRIHNCRR 162
Query: 202 LTVEFMHAVIAAKALRKVFVSVKGFYYQVELEGQTITWIVPHHFSFQPQTKDEVDFKIMS 381
L+ E+ + +LRK F+SVKG YYQ E++GQ ITW+ PH + Q D+VDF +M
Sbjct: 163 LSHEWQAYISRTHSLRKTFISVKGIYYQAEVQGQKITWLTPH--ALQQVLTDDVDFNVML 220
Query: 382 TFVEFYTMMLGFVNFKLYHSLNIVYPPKL 468
TF+EFY +LGF+NFKLYHS+N+ YPP L
Sbjct: 221 TFLEFYETLLGFINFKLYHSINVNYPPVL 249
>08_02_1543 +
27783063-27783182,27784321-27784485,27784577-27784686,
27784771-27784876,27784952-27785050,27785450-27786607
Length = 585
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +1
Query: 184 SLLCRRLTVEFMHAVIAAKALRKVFVSVKGF-YYQVELEGQTIT-WIVPHHFSFQPQTKD 357
S++ + V F+ ++A LR ++ + + + E E Q T W + H F+P T
Sbjct: 225 SIVNSLMIVLFLSGMVAMIMLRTLYRDISRYNQLETEEEAQEETGWKLVHGDVFRPPTNS 284
Query: 358 EVDFKIMSTFVEFYTMML 411
++ + T V+F+ M+L
Sbjct: 285 DLLCVYVGTGVQFFGMLL 302
>09_02_0154 + 5055946-5058721,5058754-5058770
Length = 930
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +1
Query: 340 QPQTKDEVDFKIMSTFVEFYTMMLGFVNFKLYHSLNIVYPPKLPAGFSVDKD-KDLIDEH 516
QP T +V+ + +EF+ M +++ S + Y L +V + +D+IDE+
Sbjct: 32 QPPTLVDVENNMRQLKIEFHVMKAFLTQQQIHFSQDRAYDAWLDEVKNVAHEAEDVIDEY 91
Query: 517 AYVAERIAAMNITLAKI 567
Y+A + A L K+
Sbjct: 92 VYLAGQTAKETSKLKKL 108
>09_06_0252 +
21867179-21867283,21868362-21868526,21868621-21868730,
21868802-21868904,21868998-21869110,21869204-21869357,
21869476-21870633
Length = 635
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +1
Query: 184 SLLCRRLTVEFMHAVIAAKALRKVFVSVKGF-YYQVELEGQTIT-WIVPHHFSFQPQTKD 357
S++ + V F+ ++A LR ++ + + + + E Q T W + H F+P T
Sbjct: 275 SIVNSLMIVLFLSGMVAMIMLRTLYRDISRYNQLETQEEAQEETGWKLVHGDVFRPPTNS 334
Query: 358 EVDFKIMSTFVEFYTMML 411
++ + T V+F+ M+L
Sbjct: 335 DLLCVYVGTGVQFFGMLL 352
>03_02_0740 - 10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +1
Query: 394 FYTMMLGFVNFKLYHSLNIVYPPKLPAGFSVDKDKDLIDEHAY 522
FY M+ NF + + +Y P+ P FS++ + ++ + Y
Sbjct: 1294 FYVYMVYLANFPIILGVLFLYTPRFPVQFSIEVIRIRLENNYY 1336
>03_02_0021 -
5049705-5049713,5049744-5049770,5049877-5049940,
5050019-5050806,5050888-5051046,5051778-5052419
Length = 562
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 460 PKLPAGFSVDKDKDLIDEHAYVAERIAAMNITLAKIDGANAVEEA 594
P LPAGF ++ H +A +A + LA+++ A AVE A
Sbjct: 90 PFLPAGFVSAFSAFSLERHPVLARSASAFSGQLAELERALAVESA 134
>10_08_1023 - 22341815-22342042,22342179-22342247,22342717-22342840,
22343193-22343317,22343815-22344276,22344357-22344700,
22345061-22345406,22345492-22345941,22346760-22347051,
22347171-22347515,22347611-22347834,22348072-22348563,
22348664-22349056,22349601-22349741,22349845-22350207,
22350494-22352683,22353298-22353360,22353434-22353535,
22353672-22354027,22354326-22354413,22354517-22354750,
22355508-22355975
Length = 2632
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 280 YQVELEGQTITWIVPHHFSFQPQTKDE 360
YQ +++G+ + W VP S Q KDE
Sbjct: 2269 YQEQMKGRVVDWDVPEQASGQHVMKDE 2295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,364,482
Number of Sequences: 37544
Number of extensions: 277174
Number of successful extensions: 662
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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